PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO77841

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

ARF

Protein Properties

Length: 611aa MW: 68714.4 Da PI: 8.2292

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO77841	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78.7	6.1e-25	146	248	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f k+ltpsd++++g +++pkk+a++ +++++ +++l+ +d++g +W +++iyr++++r++lt+GW+ Fv+++++ +gD+++F + ++el+v+ OMO77841 146 FSKKLTPSDTNTHGSFSIPKKHADDGclpplnMSQQTPQQELVATDLHGFQWHFRHIYRGQPRRHLLTSGWSTFVSSKKIVAGDSFIFLR--GGNGELKVG 244 88*******************888*9555555679********************************************4..378999* PP EE-S CS B3 96 vfrk 99 ++r+ OMO77841 245 IRRA 248 **97 PP
2	Auxin_resp	94	2.5e-31	273	355	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha+st+s+ +v+Y+P++++seF+++++++ k++++ +s G+Rf+m++e+++ e+r Gt+++ +d+d +rWpnS+WrsLk OMO77841 273 AFHAFSTRSMLTVYYHPWTTSSEFIIPLDQYIKSMEIDYSTGTRFRMKLEGDEPGEQRALGTIISNEDVDRIRWPNSEWRSLK 355 679******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
MDGQRNHSKT YKVSFSSRKR SVDVDGLRRP PNNPGEKDDM YIKLWHACAG PSVYVPRVGE 60 KVLYFPQGHM EQVDAYVNQE GTMEMPIYNL PSKILCRVVH VHLNAEPGTD EVFAQIALIP 120 EAEQDVLSEQ HRNYEALPRK GYSRFFSKKL TPSDTNTHGS FSIPKKHADD GCLPPLNMSQ 180 QTPQQELVAT DLHGFQWHFR HIYRGQPRRH LLTSGWSTFV SSKKIVAGDS FIFLRGGNGE 240 LKVGIRRATT LPSNTATSVI SGVSMRHGIL TSAFHAFSTR SMLTVYYHPW TTSSEFIIPL 300 DQYIKSMEID YSTGTRFRMK LEGDEPGEQR ALGTIISNED VDRIRWPNSE WRSLKVEWDR 360 AQAATDAILR QERVCPWNIE PIGFTNKKKI PYDPRHQKRT RIDGVSSPGF SSLLMNAASL 420 GLQNNWPPTF SNNALARRTF SFPNVNSQAW MTLESRNENE TSISDPNSRN KCIIFGVSLA 480 NGSPELPSPQ VLTSSEHESL IGSIPPTSQS SVSEPSEIKS SKHCTSCHSL SNRSCTKVLK 540 HGSALGRSVD LNRFDGYESL ISELDHMFEF KGKLTDGSSG WRITFTDDDG DLLLVGDYPW 600 ELMKIKANAT L

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

MDGQRNHSKT YKVSFSSRKR SVDVDGLRRP PNNPGEKDDM YIKLWHACAG PSVYVPRVGE  60
KVLYFPQGHM EQVDAYVNQE GTMEMPIYNL PSKILCRVVH VHLNAEPGTD EVFAQIALIP  120
EAEQDVLSEQ HRNYEALPRK GYSRFFSKKL TPSDTNTHGS FSIPKKHADD GCLPPLNMSQ  180
QTPQQELVAT DLHGFQWHFR HIYRGQPRRH LLTSGWSTFV SSKKIVAGDS FIFLRGGNGE  240
LKVGIRRATT LPSNTATSVI SGVSMRHGIL TSAFHAFSTR SMLTVYYHPW TTSSEFIIPL  300
DQYIKSMEID YSTGTRFRMK LEGDEPGEQR ALGTIISNED VDRIRWPNSE WRSLKVEWDR  360
AQAATDAILR QERVCPWNIE PIGFTNKKKI PYDPRHQKRT RIDGVSSPGF SSLLMNAASL  420
GLQNNWPPTF SNNALARRTF SFPNVNSQAW MTLESRNENE TSISDPNSRN KCIIFGVSLA  480
NGSPELPSPQ VLTSSEHESL IGSIPPTSQS SVSEPSEIKS SKHCTSCHSL SNRSCTKVLK  540
HGSALGRSVD LNRFDGYESL ISELDHMFEF KGKLTDGSSG WRITFTDDDG DLLLVGDYPW  600
ELMKIKANAT L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	1e-143	ARF family protein

Link Out ? help Back to Top
Ensembl	OMO77841