PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO77357
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HD-ZIP
Protein Properties Length: 798aa    MW: 88798 Da    PI: 5.4525
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO77357genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.3e-2086141156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               +++ +++t+ q++e+e++F+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  OMO77357  86 KKRYHRHTARQIQEMEAVFKECPHPDDKQRMRLSQELGLKPRQVKFWFQNRRTQMK 141
               688899***********************************************998 PP
2START159.82.1e-502845082206
               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
               la + ++elvk+  ++ep+W +s   eng+e l  +e ++             ++ea+r+s+vv+m++++lv  +ld + +W+e ++    +a+t++vis+
  OMO77357 284 LAMSSMDELVKMCRVNEPLWIRSN--ENGKELLNLEEHARMfpwplkqrsseLRTEASRDSTVVIMNSVTLVDAFLDAN-KWTELFPsivaRAKTVQVISP 381
               67789*******************..9999999999888889*************************************.********************* PP

               T.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE....TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
     START  88 g.....galqlmvaelqalsplvp.RdfvfvRyirq...lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
               g     g lqlm+aelq+lsplvp R+ +f+Ry++q   + +  w+ivd   d   ++  ++s+   ++ pSg+li++++ng+s+vtwveh++ +++ +h+
  OMO77357 382 GvsgpnGSLQLMYAELQVLSPLVPtREAYFLRYCQQqtvDDETYWAIVDFPMDGFHNNL-QASFPLYRRKPSGCLIQDMPNGYSRVTWVEHAEIEEKPVHQ 481
               ************************************99999999*****9999999988.67766666********************************* PP

               HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
     START 180 llrslvksglaegaktwvatlqrqcek 206
               ++ ++v +g+a+ga +w+a l+rqce+
  OMO77357 482 IFSHFVYNGMAFGAHRWLAVLERQCER 508
               *************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    
MYGDCQVISS MGGNVVSSET LFSSQIQNPN FNFLPFQPLP PIIPKEENGL LLRGKEEMDS  60
GSGSELQIED KSGNELESTE QPTNKKKRYH RHTARQIQEM EAVFKECPHP DDKQRMRLSQ  120
ELGLKPRQVK FWFQNRRTQM KAQQDRSDNV ILRAENESLK NEFYRLQAEL SKLVCPNCGG  180
PAVPGGISFE EIRIENARLR EELERVCAIA SRYIGRPIQT MGASPAIMPP SLDLDMNIYP  240
RHFTEPMASC AEFMPMPMLP AETGSLPENT LIIVEEEKTV AMELAMSSMD ELVKMCRVNE  300
PLWIRSNENG KELLNLEEHA RMFPWPLKQR SSELRTEASR DSTVVIMNSV TLVDAFLDAN  360
KWTELFPSIV ARAKTVQVIS PGVSGPNGSL QLMYAELQVL SPLVPTREAY FLRYCQQQTV  420
DDETYWAIVD FPMDGFHNNL QASFPLYRRK PSGCLIQDMP NGYSRVTWVE HAEIEEKPVH  480
QIFSHFVYNG MAFGAHRWLA VLERQCERVA SLMARNIADL GVIPSPEARK NLMRLAQRMI  540
RTFCVNISTS SGQLWTALPD SSDDTVRITT RKVTEPGQPN GLILCAVSTT WLPYPHYQVF  600
DLLRDERRRS QLEVLSNGNA LHEVAHIANG SHPGNCISLL RINVASNSSQ HVELMLQESC  660
TDRSGSLVVY STVDVDSVQL AMSGEDPSCI PLLPLGFFIT PVEVIRDSND HEGNKSAEEG  720
NGHISGSLLT VGLQVLASTV PSAKINLSSI AAINNHLCTT VHQITAALSS GGSPACLDNG  780
NGVLGGGSCS EPSTTPEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein