PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO77353
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HSF
Protein Properties Length: 532aa    MW: 58491.1 Da    PI: 4.7395
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO77353genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1162.3e-36451362102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++ ++sws ++nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i 
      OMO77353  45 FLSKTYDMVDDPATDGIVSWSPTNNSFIVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANERFLRGQKHLLKNIT 132
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
      OMO77353 133 RRKP 136
                   *986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    
MDGVSSSSNS QNDASTSGGG SQTAAQPQPT PQPVAVQSAN APPPFLSKTY DMVDDPATDG  60
IVSWSPTNNS FIVWNPPEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANERF  120
LRGQKHLLKN ITRRKPAHGH SHQQTQQPHG QSSSVGACVE VGKFGLEEEV ERLKRDKNVL  180
MQELVRLRQQ QQSTDNQLQT MVQRLQGMEQ RQQQMMSFLA KAVQSPGFLA QFVQQQNESN  240
RRISEANKKR RLKQDGIIDN EHSSPPDGQI IKYQPLMNEA KLLRQILKGD ASPRLDSFNN  300
SNENFLIGDD LSSPGGINGG NSSTRVSGVT LQEVPPTSGQ STYVPTTSAI SGLCPSAAIS  360
EMQMSPRATT SEKMTTAPFP DVSVPVGAQK PSSIPVPQAD IVMPDISSIT EMVPETIVNI  420
PAENYMGPET GKDGFIDPST LVANGSIPIE LDDIDIDADP DFNALLEGSN IWAEYDFLVQ  480
SPLPEDIEPP SMDDKSKGNE AQPMDNGLDK SQHNMDKLTE QMGHLGSDNK MI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247254NKKRRLKQ
2248253KKRRLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-133HSF family protein