PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO77318

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 307aa MW: 34582.5 Da PI: 8.3325

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO77318	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.1	3.6e-14	109	160	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+ OMO77318 109 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 160 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MALLETLSSN ELLNFIIYDT ISATATPFSS SHHDSLMSNF PLENNFTSTS QEQASTGLNC 60 VSTSMVTPQC RSTEAEAVER RPKNLAVQGR KKRRRKPRVC KNKEEAETQR MTHIAVERNR 120 RKQMNEHLAV LRSLMPESYV QRGDQASIVG GAIEFVKELE HLLQTLEAQK LKVVQQQEIT 180 TDSKLTLSSP PFAQFFMYPQ YTWSQIPNKY TSKTKASIAD IEVTLIETHA NLRILARKSP 240 RLLSKLVSGF HSLYLSILHL NVTTMDPFVL YSISAKVEEG CQLSSVDDIA GAVHHMLRII 300 EEDATSV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	96	RKKRRRK
2	90	97	RKKRRRKP
3	91	96	KKRRRK
4	110	121	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-74	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO77318