PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO77314
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 362aa    MW: 39311.3 Da    PI: 7.4976
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO77314genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-0891115126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               +kt+lC+ f++ GtC+y  +C+FaH+
  OMO77314  91 FKTKLCCKFRA-GTCPYITNCNFAHS 115
               69*********.*************8 PP

2zf-CCCH18.63.4e-06165190126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               yk + C+ f+    C+yGd+C+F H+
  OMO77314 165 YKGRHCKKFYTEEGCPYGDNCTFLHD 190
               78888********************7 PP

3zf-CCCH41.81.8e-13242267126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               +kt++C+ +  tG+C++G++C+FaHg
  OMO77314 242 WKTRICNKWELTGYCPFGNKCHFAHG 267
               8************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MDYSRENVVH VIPTNGPENW IPNSADPSVW ATEEDYRVWN NHETSTDTPS NSSYDQRQPQ  60
SRSGSEQPPN KKPRNSQDLN SRSKAIGKMF FKTKLCCKFR AGTCPYITNC NFAHSIEELR  120
RPPPNWQEIV AAHEEEKGNL GEPREEFQIP SLGSSSFTGE SQRSYKGRHC KKFYTEEGCP  180
YGDNCTFLHD EQSKNRESVA ISLGPGGYGG GGGGGGGGGG SAVAGAGGVA GANGSNAKPS  240
NWKTRICNKW ELTGYCPFGN KCHFAHGAAE LHRYGGGLVE GEAKDSTATP SDPKQGGVPS  300
KPPADTVVAS VPSIPHSDVY HLGVPSQRTA LVIQRPGQRT LQKWKGPDKI SRIYGDWIDD  360
IE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-138C3H family protein