PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO77314

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C3H

Protein Properties

Length: 362aa MW: 39311.3 Da PI: 7.4976

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO77314	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.5e-08	91	115	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ OMO77314 91 FKTKLCCKFRA-GTCPYITNCNFAHS 115 69*******.***********8 PP
2	zf-CCCH	18.6	3.4e-06	165	190	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ OMO77314 165 YKGRHCKKFYTEEGCPYGDNCTFLHD 190 78888********************7 PP
3	zf-CCCH	41.8	1.8e-13	242	267	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg OMO77314 242 WKTRICNKWELTGYCPFGNKCHFAHG 267 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MDYSRENVVH VIPTNGPENW IPNSADPSVW ATEEDYRVWN NHETSTDTPS NSSYDQRQPQ 60 SRSGSEQPPN KKPRNSQDLN SRSKAIGKMF FKTKLCCKFR AGTCPYITNC NFAHSIEELR 120 RPPPNWQEIV AAHEEEKGNL GEPREEFQIP SLGSSSFTGE SQRSYKGRHC KKFYTEEGCP 180 YGDNCTFLHD EQSKNRESVA ISLGPGGYGG GGGGGGGGGG SAVAGAGGVA GANGSNAKPS 240 NWKTRICNKW ELTGYCPFGN KCHFAHGAAE LHRYGGGLVE GEAKDSTATP SDPKQGGVPS 300 KPPADTVVAS VPSIPHSDVY HLGVPSQRTA LVIQRPGQRT LQKWKGPDKI SRIYGDWIDD 360 IE

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MDYSRENVVH VIPTNGPENW IPNSADPSVW ATEEDYRVWN NHETSTDTPS NSSYDQRQPQ  60
SRSGSEQPPN KKPRNSQDLN SRSKAIGKMF FKTKLCCKFR AGTCPYITNC NFAHSIEELR  120
RPPPNWQEIV AAHEEEKGNL GEPREEFQIP SLGSSSFTGE SQRSYKGRHC KKFYTEEGCP  180
YGDNCTFLHD EQSKNRESVA ISLGPGGYGG GGGGGGGGGG SAVAGAGGVA GANGSNAKPS  240
NWKTRICNKW ELTGYCPFGN KCHFAHGAAE LHRYGGGLVE GEAKDSTATP SDPKQGGVPS  300
KPPADTVVAS VPSIPHSDVY HLGVPSQRTA LVIQRPGQRT LQKWKGPDKI SRIYGDWIDD  360
IE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-138	C3H family protein

Link Out ? help Back to Top
Ensembl	OMO77314