PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO77297

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 516aa MW: 56395.3 Da PI: 6.2206

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO77297	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.4e-13	337	382	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L OMO77297 337 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 382 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MEAFMSSDLS ALWPPPQSSA STSTPAAASG PDPSKSSLAQ SQPSVSLLNQ ETLQQRLQAL 60 IEGARESWTY AIFWQSSYGY SGTVLGWGDG YYKGEEDKGK GKLKASASTA AEQEHRKKVL 120 RELNSLISGS AAPNDDAVDE EVTDTEWFFL VSMTQSFVNG SGLPGQALYN SSPVWVAGPD 180 RLASSMCERA RQGQVFGLQT IVCIPSANGV VELGSTELIT QSSDLMNKPE SGEILNFGES 240 KRNGSGNLFS GPMEENKKRK SPTSRGSNEE GMLSFTSGVI LPSSGVVKSS GGPGDSDHSD 300 LEASVVKDAD SSRVVEPEKK PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV 360 PNVSKMDKAS LLGDAISYIN ELRTKLQNSD SEKEELQKQL EEMRKELANK DSRAPPPDQE 420 LKMSNHLGKL IELEIDVKVI GCDAMIRIQC NRKNHPAARL MAALKELDLD VHHASVSVVN 480 DLMIQQATVK MGSRYYTQDQ LRIALTSKVG DAIRVY

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MEAFMSSDLS ALWPPPQSSA STSTPAAASG PDPSKSSLAQ SQPSVSLLNQ ETLQQRLQAL  60
IEGARESWTY AIFWQSSYGY SGTVLGWGDG YYKGEEDKGK GKLKASASTA AEQEHRKKVL  120
RELNSLISGS AAPNDDAVDE EVTDTEWFFL VSMTQSFVNG SGLPGQALYN SSPVWVAGPD  180
RLASSMCERA RQGQVFGLQT IVCIPSANGV VELGSTELIT QSSDLMNKPE SGEILNFGES  240
KRNGSGNLFS GPMEENKKRK SPTSRGSNEE GMLSFTSGVI LPSSGVVKSS GGPGDSDHSD  300
LEASVVKDAD SSRVVEPEKK PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV  360
PNVSKMDKAS LLGDAISYIN ELRTKLQNSD SEKEELQKQL EEMRKELANK DSRAPPPDQE  420
LKMSNHLGKL IELEIDVKVI GCDAMIRIQC NRKNHPAARL MAALKELDLD VHHASVSVVN  480
DLMIQQATVK MGSRYYTQDQ LRIALTSKVG DAIRVY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	319	327	KKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	3e-85	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO77297