PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO77258

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

LSD

Protein Properties

Length: 99aa MW: 10098.9 Da PI: 7.0918

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO77258	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.2	6.6e-14	30	54	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V OMO77258 30 CSGCRNLLLYPVGATSVCCAVCNAV 54 ************************9 PP
2	zf-LSD1	47.7	2.5e-15	69	93	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV OMO77258 69 CGGCHTLLMYIRGATSVQCSCCHTV 93 ************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence
MPVPLAPYPT PPAPYTPPPP ANAAQSQLVC SGCRNLLLYP VGATSVCCAV CNAVTAVPPP 60 GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	1e-34	LSD family protein

Link Out ? help Back to Top
Ensembl	OMO77258