PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO77258 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | LSD | ||||||||
Protein Properties | Length: 99aa MW: 10098.9 Da PI: 7.0918 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.2 | 6.6e-14 | 30 | 54 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V OMO77258 30 CSGCRNLLLYPVGATSVCCAVCNAV 54 ************************9 PP | |||||||
2 | zf-LSD1 | 47.7 | 2.5e-15 | 69 | 93 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV OMO77258 69 CGGCHTLLMYIRGATSVQCSCCHTV 93 ************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence |
MPVPLAPYPT PPAPYTPPPP ANAAQSQLVC SGCRNLLLYP VGATSVCCAV CNAVTAVPPP 60 GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 1e-34 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO77258 |