PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO77232
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 312aa    MW: 35445.2 Da    PI: 5.2025
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO77232genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.33.1e-324311753128
       NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
               +++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v++ +++++g +ktLvfy+grap g +tdWvmheyrl
  OMO77232  43 KRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVC-QSAVTGYRKTLVFYRGRAPLGDRTDWVMHEYRL 117
               3567**************************************.999****************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MGPATFLFQL KEKSSFDQNF FLFSNEKNAT QSIVLTEKSF LPKRDLEWFF FCPRDRKYPN  60
GSRTNRATKA GYWKATGKDR KVVCQSAVTG YRKTLVFYRG RAPLGDRTDW VMHEYRLSDE  120
PSPGSSNQVA FALCRVVKRN EQKAKSTAVG SSSGAMVELT SSTMICNEPL SDISCQTSYP  180
NNESRYSSPV TSPYPYEVTQ IPPNEPPSAH TDPASVWVSP DMILDSSKDY PQICETASQY  240
FPQYEFPNSG SLWQQQYEQQ TDFSPSSSYS NFGEIENLDD LSRIGCMSPN YMDFYGNEGY  300
DQTGSFNYLN HF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.14e-72NAC family protein