PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO77186
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ARR-B
Protein Properties Length: 552aa    MW: 61609.2 Da    PI: 6.0206
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO77186genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like888.6e-28314367256
   G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                +++WtpeLH++Fv+av+qL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++
  OMO77186 314 LKVDWTPELHKKFVQAVDQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 367
               5899****************.********************************96 PP
2Myb_DNA-binding42.81.2e-13316365248
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                        WT+e+++++v+av qlG +   +++I + m  +g+t+ ++ s++qky+
         OMO77186 316 VDWTPELHKKFVQAVDQLGIDqaIPSRILELMKvEGLTRHNVASHLQKYR 365
                      57***********************************************7 PP
3Response_reg24.31.6e-09201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d++ + +  +++ le  +y +v ++ +  eal  +  +   +++ ++ ++  + +G+  +k +++++ +lp i+ +     +++ +++ +Ga 
      OMO77186  20 VLLLDEDSNSAADIKSKLEAMDY-IVYTFCNENEALSAVSSRPesFHVAIVEVNADNNNGS--FKFLETAK-DLPTIMTSNIHCINTMMKCIALGAV 112
                   7899999999999**********.***************666666**************97..67777766.99***9999889************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp ++++l++
      OMO77186 113 EFLRKPLSEDKLRN 126
                   ***********987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    
MVCTANELSE WKDFPKGLRV LLLDEDSNSA ADIKSKLEAM DYIVYTFCNE NEALSAVSSR  60
PESFHVAIVE VNADNNNGSF KFLETAKDLP TIMTSNIHCI NTMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKAFNAGG NDLSQTLKPV KESVVSMLHL ELENGKLEDK DSEKTEDASM  180
AHEDDHEPSP RSDKYPAPST PQIKQGGRLL DDGDCQDNTN CSTEKESMEQ DGESKSVETT  240
SGNAIAEVTA SDGQPQGPRE TETVVKEEAD LVDGTKESTK YSHSQNRSHS KDSHAGAEKP  300
NTVSSLSKVN RKKLKVDWTP ELHKKFVQAV DQLGIDQAIP SRILELMKVE GLTRHNVASH  360
LQKYRMHRRH ILPKEDDRRW PQRDQTQRSC FPHKPIMAFP PYHSNHVVPV SPVYPMWGAP  420
PHPANIQMWG SPGYPPWQPT ESWHWKPYPG VHADAWGCPV MPPPQGYCSA FTQNATGFNY  480
SGTMDCRSPM TPNSVEHEPE DEIIDKVVKE AINKPWLPLP LGLKPPSTDI VLAELSRQGI  540
STIPPHINGS NS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.31e-162ARR-B family protein