PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO76959
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family Trihelix
Protein Properties Length: 350aa    MW: 39815.7 Da    PI: 5.9662
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO76959genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.12e-172603182786
  trihelix  27 kkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               k   W+e+s+ m   g++r++k+Ckekwen+nk+++k   + +k+  e+s++c+yf++l+
  OMO76959 260 KCSVWDEISIGMYNMGYHRNAKKCKEKWENINKYFRKSMGSGRKH-LENSKRCAYFHELN 318
               5678***************************************99.577789******96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MELFTGGREA FTFPQHVAPF PELTAMIESA EDSMMGGEHH PNLPAQKLRP IRYNGRSPAS  60
SQAEDPSEFT GVGEVVGEEV CPVNADYLEP PIKAEGGDDV VDTAGGNGPE KLEPSSSSSS  120
SSDSDDDNDP SATLDEPLNR KRKRKTRKKM ELFLEKLVMK VMEKQEQMHK QLMEMIEKRE  180
RERRIREEAW KRQEIERIKR DQEARAQETS RSIALISFIQ NVLGHEIEIP IQATIPCMEE  240
NGGKDVISED HIQKELIGSK CSVWDEISIG MYNMGYHRNA KKCKEKWENI NKYFRKSMGS  300
GRKHLENSKR CAYFHELNML YKHGLVSPAN HVNRTSDENE DGVKGSQHQT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140145RKRKRK
2140148RKRKRKTRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-35Trihelix family protein