PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO76920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 548aa    MW: 61195.1 Da    PI: 6.1354
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO76920genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.91.4e-1261785481374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l+e+L++c +a+++gd+  +  l+  l++++s +g+p+qRl ay++e+L+arl +s+s++ykal++++ +   sse ++++++++ v+P+ kf++  aN  
  OMO76920 178 LKEVLVSCGQALHNGDMPTVAGLMHVLEKMVSVSGEPIQRLGAYVLEGLRARLESSGSSIYKALKCEQPT---SSELMSYMHILFRVCPYWKFAYTSANAV 275
               5789*****************************************************************9...99************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               I e +e e r+HiiDf+i qG+QW+ L+ aLa+Rp+gpps+RiTg+++++s+  +   l+ +g+rLa+fA++ +vpfef+  +  ++ ++e e+L+v+pgE
  OMO76920 276 IKEVMEYEPRIHIIDFQIAQGTQWMFLIAALAKRPGGPPSIRITGIDDSQSNlaRGGGLNIVGQRLAEFAKSYNVPFEFHD-TGLTCCQIEREHLKVQPGE 375
               ************************************************99999999*************************.899**************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               alaVn+ + lh+++desvs++++rd++L+lvkslsPkvv+vveqe+++n+++F++rf e+l+yy+a+f+s+++  +r++++ri+ E+++++r+ivn++ace
  OMO76920 376 ALAVNFPFVLHHMPDESVSTSNHRDRLLRLVKSLSPKVVTVVEQESNTNTSPFFARFRETLDYYTAMFESIDVACARDDKQRISAEQHCVARDIVNMIACE 476
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               g er+erhe l+kW++r+++aGF+++ ls+++++ ++ +l++++++ yr+ e++g+l+lgW dr++ + SaWr
  OMO76920 477 GPERVERHELLGKWKSRFRMAGFSQYYLSSSVTEAVREMLKEYNNN-YRLVEREGALYLGWVDRAMATSSAWR 548
               ********************************************66.*************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    
MQTSQKHQAP ASIHRLYQQP VQEIEPFCLP HIQILDNNVS SDVGSQGTSV SFQTYKDQFF  60
TLESSTAIGG FVVYDSPSAV SISSSRSPFS PQGSQSCLSD PHHSPDNAYG SPFSGSSVAD  120
DSNDWKHKLR ELEMSLLGPE SDINDSCNCC FSSGAHQAAS MAGFNFDQLV EMIPRLDLKE  180
VLVSCGQALH NGDMPTVAGL MHVLEKMVSV SGEPIQRLGA YVLEGLRARL ESSGSSIYKA  240
LKCEQPTSSE LMSYMHILFR VCPYWKFAYT SANAVIKEVM EYEPRIHIID FQIAQGTQWM  300
FLIAALAKRP GGPPSIRITG IDDSQSNLAR GGGLNIVGQR LAEFAKSYNV PFEFHDTGLT  360
CCQIEREHLK VQPGEALAVN FPFVLHHMPD ESVSTSNHRD RLLRLVKSLS PKVVTVVEQE  420
SNTNTSPFFA RFRETLDYYT AMFESIDVAC ARDDKQRISA EQHCVARDIV NMIACEGPER  480
VERHELLGKW KSRFRMAGFS QYYLSSSVTE AVREMLKEYN NNYRLVEREG ALYLGWVDRA  540
MATSSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein