PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO76920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | GRAS | ||||||||
Protein Properties | Length: 548aa MW: 61195.1 Da PI: 6.1354 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 413.9 | 1.4e-126 | 178 | 548 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 l+e+L++c +a+++gd+ + l+ l++++s +g+p+qRl ay++e+L+arl +s+s++ykal++++ + sse ++++++++ v+P+ kf++ aN OMO76920 178 LKEVLVSCGQALHNGDMPTVAGLMHVLEKMVSVSGEPIQRLGAYVLEGLRARLESSGSSIYKALKCEQPT---SSELMSYMHILFRVCPYWKFAYTSANAV 275 5789*****************************************************************9...99************************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 I e +e e r+HiiDf+i qG+QW+ L+ aLa+Rp+gpps+RiTg+++++s+ + l+ +g+rLa+fA++ +vpfef+ + ++ ++e e+L+v+pgE OMO76920 276 IKEVMEYEPRIHIIDFQIAQGTQWMFLIAALAKRPGGPPSIRITGIDDSQSNlaRGGGLNIVGQRLAEFAKSYNVPFEFHD-TGLTCCQIEREHLKVQPGE 375 ************************************************99999999*************************.899**************** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 alaVn+ + lh+++desvs++++rd++L+lvkslsPkvv+vveqe+++n+++F++rf e+l+yy+a+f+s+++ +r++++ri+ E+++++r+ivn++ace OMO76920 376 ALAVNFPFVLHHMPDESVSTSNHRDRLLRLVKSLSPKVVTVVEQESNTNTSPFFARFRETLDYYTAMFESIDVACARDDKQRISAEQHCVARDIVNMIACE 476 ***************************************************************************************************** PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 g er+erhe l+kW++r+++aGF+++ ls+++++ ++ +l++++++ yr+ e++g+l+lgW dr++ + SaWr OMO76920 477 GPERVERHELLGKWKSRFRMAGFSQYYLSSSVTEAVREMLKEYNNN-YRLVEREGALYLGWVDRAMATSSAWR 548 ********************************************66.*************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence |
MQTSQKHQAP ASIHRLYQQP VQEIEPFCLP HIQILDNNVS SDVGSQGTSV SFQTYKDQFF 60 TLESSTAIGG FVVYDSPSAV SISSSRSPFS PQGSQSCLSD PHHSPDNAYG SPFSGSSVAD 120 DSNDWKHKLR ELEMSLLGPE SDINDSCNCC FSSGAHQAAS MAGFNFDQLV EMIPRLDLKE 180 VLVSCGQALH NGDMPTVAGL MHVLEKMVSV SGEPIQRLGA YVLEGLRARL ESSGSSIYKA 240 LKCEQPTSSE LMSYMHILFR VCPYWKFAYT SANAVIKEVM EYEPRIHIID FQIAQGTQWM 300 FLIAALAKRP GGPPSIRITG IDDSQSNLAR GGGLNIVGQR LAEFAKSYNV PFEFHDTGLT 360 CCQIEREHLK VQPGEALAVN FPFVLHHMPD ESVSTSNHRD RLLRLVKSLS PKVVTVVEQE 420 SNTNTSPFFA RFRETLDYYT AMFESIDVAC ARDDKQRISA EQHCVARDIV NMIACEGPER 480 VERHELLGKW KSRFRMAGFS QYYLSSSVTE AVREMLKEYN NNYRLVEREG ALYLGWVDRA 540 MATSSAWR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17230.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO76920 |