PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO76759 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | LBD | ||||||||
Protein Properties | Length: 299aa MW: 33766.4 Da PI: 6.2525 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.2 | 1.4e-38 | 10 | 110 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 aCaaCk++rrkC+++C+lapyfpa+q++ f+n+hklFG+sn+lk+l++l++ ++ +am+s+ y+A++r + PvyG+v vi+++ q++ +++el +++++l OMO76759 10 ACAACKYQRRKCTPECPLAPYFPADQARVFQNAHKLFGVSNILKILRNLDPAQQAEAMRSIKYQANVRDKFPVYGCVYVIRNYYYQIQLVEEELLAVHAQL 110 7*********************************************************************************************9999875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence |
MTLKGGIASA CAACKYQRRK CTPECPLAPY FPADQARVFQ NAHKLFGVSN ILKILRNLDP 60 AQQAEAMRSI KYQANVRDKF PVYGCVYVIR NYYYQIQLVE EELLAVHAQL EMYRQHHQIS 120 DHHHHQNNIP SQLELGMAPP SNNNNIALPL FNQVPQHNYN SLPVSMQHSY SNSSNNLGYS 180 SSYSDSKENI AANSLWVSHG FAPNNDSDNN SINPMAIQSH HQQLLSPHPL AVQQEVVHDY 240 DEIHPFFDTI DDRQSYMDSK EAYESSSEES LKDTTQSVEH AAENELKSAA ACFSLTSVN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-46 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO76759 |