PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO76759
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 299aa    MW: 33766.4 Da    PI: 6.2525
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO76759genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.21.4e-38101101101
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
               aCaaCk++rrkC+++C+lapyfpa+q++ f+n+hklFG+sn+lk+l++l++ ++ +am+s+ y+A++r + PvyG+v vi+++  q++ +++el +++++l
  OMO76759  10 ACAACKYQRRKCTPECPLAPYFPADQARVFQNAHKLFGVSNILKILRNLDPAQQAEAMRSIKYQANVRDKFPVYGCVYVIRNYYYQIQLVEEELLAVHAQL 110
               7*********************************************************************************************9999875 PP

Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MTLKGGIASA CAACKYQRRK CTPECPLAPY FPADQARVFQ NAHKLFGVSN ILKILRNLDP  60
AQQAEAMRSI KYQANVRDKF PVYGCVYVIR NYYYQIQLVE EELLAVHAQL EMYRQHHQIS  120
DHHHHQNNIP SQLELGMAPP SNNNNIALPL FNQVPQHNYN SLPVSMQHSY SNSSNNLGYS  180
SSYSDSKENI AANSLWVSHG FAPNNDSDNN SINPMAIQSH HQQLLSPHPL AVQQEVVHDY  240
DEIHPFFDTI DDRQSYMDSK EAYESSSEES LKDTTQSVEH AAENELKSAA ACFSLTSVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-46LBD family protein