PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO76743
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HD-ZIP
Protein Properties Length: 733aa    MW: 80297.8 Da    PI: 5.8684
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO76743genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-1954109156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               +++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  OMO76743  54 KKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 109
               678899***********************************************998 PP
2START222.21.6e-692484671206
               HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT. CS
     START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg. 88 
               ela +a++el+++a+++ep+Wv      + +n+de+l++f+++ +      ++ea+r+s+vv+m++++lve+l+d++ qW+  +     +a+tlev+s+g 
  OMO76743 248 ELAVAAMEELIRMAQSGEPLWVPGEnstDVLNEDEYLRTFPRGIGpkplgLRSEASRESAVVIMNHVNLVEILMDVN-QWSSVFCgivsRAMTLEVLSTGv 347
               57899*****************9888889*************999********************************.******99999************ PP

               .....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
     START  89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                    galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d  ++ p    + +++++pSg+li++++ng+skvtwvehv++++r++h+++r+
  OMO76743 348 agnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHTDGTWAVVDVSLDTLRPSP----MSKSRRRPSGCLIQELPNGYSKVTWVEHVEVDDRSVHNIYRP 444
               *****************************************************99....4666679*********************************** PP

               HHHHHHHHHHHHHHHHTXXXXXX CS
     START 184 lvksglaegaktwvatlqrqcek 206
               lv++gla+gak+wvatl+rqce+
  OMO76743 445 LVNTGLAFGAKRWVATLDRQCER 467
               *********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    
MFSPNLFESP HLFDMTHKTS ESEMGKLKDD DYETTEIMDA PSGDDQDPNQ RAKKKRYHRH  60
TQRQIQEMEA FFKECPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKA QHERHENAIL  120
KAENEKLRAE NNRYKEALSN ATCPNCGGPA SLGEMSFDEQ HLRIENARLR EEIDRISGIA  180
AKYVGKPLTS LTQLSSNSHL HSRSIDLGSS NFGTQSSGFV GEMYGGGGGD LLRSVSGPTE  240
ADKPMIVELA VAAMEELIRM AQSGEPLWVP GENSTDVLNE DEYLRTFPRG IGPKPLGLRS  300
EASRESAVVI MNHVNLVEIL MDVNQWSSVF CGIVSRAMTL EVLSTGVAGN YNGALQVMTA  360
EFQVPSPLVP TRENYFVRYC KQHTDGTWAV VDVSLDTLRP SPMSKSRRRP SGCLIQELPN  420
GYSKVTWVEH VEVDDRSVHN IYRPLVNTGL AFGAKRWVAT LDRQCERLAS SMASNIPAGD  480
LCVITSPEGR KSMLKLAERM VTSFCTGVGA STAHAWTTLS ATGSDDVRVM TRKSMDDPGR  540
PPGIVLSAAT SFWISVPPKR VFDFLRDENS RSEWDILSNG GLVQEMAHIA NGRDPGNCVS  600
LLRVNSANSS QSNMLILQES CSDATGSYVI YAPVDIVAMN LVLSGGDPDY VALLPSGFAI  660
LPDGPGALNN NVNGGTGIHE IGSGGSLLTV AFQILVDSIP TAKLSLGSVA TVNSLIKCTV  720
ERIKAAVMCD NNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein