PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO76549

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Protein Properties

Length: 888aa MW: 97488.4 Da PI: 7.9774

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO76549	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.3	1.4e-18	343	442	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G + +L++gD+v+F++ + +++lv++++ OMO76549 343 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDVVTFSRLE-PGGKLVMGFR 441 89************************555566778***********99899999999.*******************665.7777777777 PP - CS B3 98 r 98 + OMO76549 442 K 442 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 888 aa Download sequence
MTSTSGAASS SKICFNSDCK DLKSERPRKG WRLRTGELAE LCDRCASVYE EGRFCDTFHL 60 NASGWRSCES CGKRVHCGCI VSAHAFTLLD AGGIECLACA RKNVVLGSNS SWPSSLLFNT 120 SLPERLKDYP AKNWSQLAGS GPVPWRQAPS LFNSSIPQPE LHSSVPYEVD LSTSIDRLNA 180 TERLSTPSLE KKRIEDFGER LMNGSSLKLG TRDIHENGNA GINCDEQPSS CSTKSQQPSL 240 KEESSKPPFG LVVPYTSPDE VNGQLGLSGT HSRPNPQPPL AKQFHNNQHN GHDSSSEPQT 300 RNGKPRPDGR GRNQLFPRYW PRFTDQDLLQ ISGDSNSVIT PLFEKMLSAS DAGRIGRLVL 360 PKKCAEAYFP PISQPEGLPL KVQDSKGKEW IFQFRFWPNN NSRMYVLEGV TPCIQNMQLQ 420 AGDVVTFSRL EPGGKLVMGF RKASTASASE QDNEAKSNNG VSVHVDTELA DPASWSKVDK 480 SGYIAKEAIG TKLAVSRKRK SSTLGSKSKR LRIDNEDLIE LKITWEEAQG LLRPPLNHIP 540 SVVVIEGFEF EEYEDAPILG KPTIRATDSS GEKIQWVQCE DCSKWRRLPS NALLPSKWTC 600 SSNSWDPERS FCSAAQELTA EQLEDLLPHC NSVASKKMKA TKQEPENVDA LEGLDTLANL 660 AILGEGEGLP ASSQATTKHP RHRPGCSCIV CIQPPSGKGP KHKQTCTCNV CQTVKRRFRT 720 LMLRREKKQS QKEAETTRKK QQSPMRDKLM DDDSLPCSNA GNSSPNPIKV VSEGGSDDDP 780 NRVKSSTSPF KGQIDLNIQP EREEELSPGS DSGSMMKLLQ DATERYLRQQ RLNFGGNSSS 840 VVTQTQPVGG TGDKIGNSVN LGASHQDPDR DHPAVFPIKA SAHTSATG

Sequence ? help Back to Top

Protein Sequence Length: 888 aa Download sequence

MTSTSGAASS SKICFNSDCK DLKSERPRKG WRLRTGELAE LCDRCASVYE EGRFCDTFHL  60
NASGWRSCES CGKRVHCGCI VSAHAFTLLD AGGIECLACA RKNVVLGSNS SWPSSLLFNT  120
SLPERLKDYP AKNWSQLAGS GPVPWRQAPS LFNSSIPQPE LHSSVPYEVD LSTSIDRLNA  180
TERLSTPSLE KKRIEDFGER LMNGSSLKLG TRDIHENGNA GINCDEQPSS CSTKSQQPSL  240
KEESSKPPFG LVVPYTSPDE VNGQLGLSGT HSRPNPQPPL AKQFHNNQHN GHDSSSEPQT  300
RNGKPRPDGR GRNQLFPRYW PRFTDQDLLQ ISGDSNSVIT PLFEKMLSAS DAGRIGRLVL  360
PKKCAEAYFP PISQPEGLPL KVQDSKGKEW IFQFRFWPNN NSRMYVLEGV TPCIQNMQLQ  420
AGDVVTFSRL EPGGKLVMGF RKASTASASE QDNEAKSNNG VSVHVDTELA DPASWSKVDK  480
SGYIAKEAIG TKLAVSRKRK SSTLGSKSKR LRIDNEDLIE LKITWEEAQG LLRPPLNHIP  540
SVVVIEGFEF EEYEDAPILG KPTIRATDSS GEKIQWVQCE DCSKWRRLPS NALLPSKWTC  600
SSNSWDPERS FCSAAQELTA EQLEDLLPHC NSVASKKMKA TKQEPENVDA LEGLDTLANL  660
AILGEGEGLP ASSQATTKHP RHRPGCSCIV CIQPPSGKGP KHKQTCTCNV CQTVKRRFRT  720
LMLRREKKQS QKEAETTRKK QQSPMRDKLM DDDSLPCSNA GNSSPNPIKV VSEGGSDDDP  780
NRVKSSTSPF KGQIDLNIQP EREEELSPGS DSGSMMKLLQ DATERYLRQQ RLNFGGNSSS  840
VVTQTQPVGG TGDKIGNSVN LGASHQDPDR DHPAVFPIKA SAHTSATG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	496	501	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-164	B3 family protein

Link Out ? help Back to Top
Ensembl	OMO76549