PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO76393

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Dof

Protein Properties

Length: 374aa MW: 40492.6 Da PI: 8.0373

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO76393	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	2e-39	59	119	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ OMO76393 59 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 119 7899******************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MLSNCEKMVV ISSTTNEWPQ THNIDEKDLM ASTARLMEKP AVTQEQQQPQ QQAQQQIQQQ 60 QALKCPRCDS SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRVKR 120 PSSAIDAAGG VSSTSGGANP NLPHSHQPQI DVSSTSSPHH INPLFYGLTN NPSDINNNLP 180 FPRFNSTGGG GGGYDLQPQL NALALGFSSG GDSHHDYGNG FNVNPSKQIQ DISSNPLLSS 240 YSNLFGSSSS SSNTPTIASL LASTLHQHKF MNGGVKNTTQ NTLNHFQALP PFQDLQVTGN 300 NTTENGLSMK DHVKVELEGQ SRSMEWNVNV GCQNQLEQVG LSDPTVYWNP TSVGGGGGAW 360 HDPSNIGSSV TSLI

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MLSNCEKMVV ISSTTNEWPQ THNIDEKDLM ASTARLMEKP AVTQEQQQPQ QQAQQQIQQQ  60
QALKCPRCDS SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRVKR  120
PSSAIDAAGG VSSTSGGANP NLPHSHQPQI DVSSTSSPHH INPLFYGLTN NPSDINNNLP  180
FPRFNSTGGG GGGYDLQPQL NALALGFSSG GDSHHDYGNG FNVNPSKQIQ DISSNPLLSS  240
YSNLFGSSSS SSNTPTIASL LASTLHQHKF MNGGVKNTTQ NTLNHFQALP PFQDLQVTGN  300
NTTENGLSMK DHVKVELEGQ SRSMEWNVNV GCQNQLEQVG LSDPTVYWNP TSVGGGGGAW  360
HDPSNIGSSV TSLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	9e-51	Dof family protein

Link Out ? help Back to Top
Ensembl	OMO76393