PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO76342

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WOX

Protein Properties

Length: 392aa MW: 42852.9 Da PI: 8.0329

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO76342	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.9e-18	55	115	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ OMO76342 55 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 115 89***************99***********************************995 PP
2	Wus_type_Homeobox	112.1	2.8e-36	54	116	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k OMO76342 54 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 116 689**********************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MASSNRHWPS MFKSKPCNTH HQWQHDINPS LISSGCHRPP YNSVTGCEER SPEPKPRWNP 60 KPEQIRILEA IFNSGMVNPP RDEIRKIRAQ LQEYGQVGDA NVFYWFQNRK SRSKHKLRNL 120 QNSKQPPQQN QQPLQTPPPI TNITTLTAPS SSSSSSSEKS SPNKSTLSLT SPNVIDVVNS 180 PTASVNQTYF HQQPQNDQSF LNEPFFFQVQ QAAAAAAAAA GAGFTQGFGF PELANMVQAV 240 PENQPVGPCT SLLLSEILNH GSVSKKEHEE EKMKMQLQLN YALTSNAPST LTISPPTATI 300 TVPSNINPNL QGVGESGAVG PGGAARSTVF INDVAFEVAV GPFNVREAFG DDAILINSSG 360 QPILTNEWGL TLHSLQHGGF YYLVRSLSPF SV

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MASSNRHWPS MFKSKPCNTH HQWQHDINPS LISSGCHRPP YNSVTGCEER SPEPKPRWNP  60
KPEQIRILEA IFNSGMVNPP RDEIRKIRAQ LQEYGQVGDA NVFYWFQNRK SRSKHKLRNL  120
QNSKQPPQQN QQPLQTPPPI TNITTLTAPS SSSSSSSEKS SPNKSTLSLT SPNVIDVVNS  180
PTASVNQTYF HQQPQNDQSF LNEPFFFQVQ QAAAAAAAAA GAGFTQGFGF PELANMVQAV  240
PENQPVGPCT SLLLSEILNH GSVSKKEHEE EKMKMQLQLN YALTSNAPST LTISPPTATI  300
TVPSNINPNL QGVGESGAVG PGGAARSTVF INDVAFEVAV GPFNVREAFG DDAILINSSG  360
QPILTNEWGL TLHSLQHGGF YYLVRSLSPF SV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	5e-64	WOX family protein

Link Out ? help Back to Top
Ensembl	OMO76342