PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO76331

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

ARF

Protein Properties

Length: 741aa MW: 80541.8 Da PI: 6.6703

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO76331	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.8	1.2e-24	155	256	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + +++el+++ OMO76331 155 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGEDGELRLG 252 99**************************963.3445679********************************************..449999** PP EE-S CS B3 96 vfrk 99 v+r+ OMO76331 253 VRRA 256 *996 PP
2	Auxin_resp	126.6	1.6e-41	281	362	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 ++ha+s+ksvF+++YnPras+seF+++v+k+ k+l++++s+GmRfkm+feted++err++G+v+g+sd+dpvrWp+SkWr+L OMO76331 281 VIHAISMKSVFSIYYNPRASSSEFIIPVNKFWKSLDHPFSAGMRFKMRFETEDAAERRYTGLVTGISDMDPVRWPGSKWRCL 362 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence
MGGLIDLNTT EDDETPSSGS LSPSSSSASV LSAPSAPASG SSSSVCLELW HACAGPLISL 60 PKKGSVIVYF PQGHLEQVSD FSGVAAAYDL PLHVFCRVVD VKLHAETATD EVYAEVSLIP 120 ETEHIEQKLQ EGKVEGDGEE EDVEADIKST TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC 180 FPPLDYNQQR PSQELVAKDL HGLEWRFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL 240 FLRGEDGELR LGVRRAAQIK SGSSFPNLCS QHLNRGTFAD VIHAISMKSV FSIYYNPRAS 300 SSEFIIPVNK FWKSLDHPFS AGMRFKMRFE TEDAAERRYT GLVTGISDMD PVRWPGSKWR 360 CLLVRWDDID ANRHSRVSPW EIEPSGSVSS SNNLLTPGLK RNRVGLPSGK PEFMVPDGIG 420 ASDFGESFRF QKVLQGQEIL GFNTVYDGVD SQNLHRSEIR RCFPGSNGSG ISAIGNVCRD 480 PVVNSDISYK SVGFGESFRF HKVLQGQEIF VSPSCRRGPT TEETQDNDGV SDAGQLSGTR 540 SGWSSLMQGY SSNSHIRPSA QVSSPSSVLM FQQASNPFPN FNPAYNNFNS QEKGQGVNNR 600 NSFVAPESYG GKVLPSATGE QSSCGRGPGS LGSFGHSNGY VQLGDSPLAA QPAFRTSQDL 660 ASSCKSSCRL FGFSLTEGQH ESNKKDNMVQ ATSPLGQGAF LPRIGEQCHS KPPAVTNAVG 720 TNCTKVSNLY AVRDMLFDIA L

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence

MGGLIDLNTT EDDETPSSGS LSPSSSSASV LSAPSAPASG SSSSVCLELW HACAGPLISL  60
PKKGSVIVYF PQGHLEQVSD FSGVAAAYDL PLHVFCRVVD VKLHAETATD EVYAEVSLIP  120
ETEHIEQKLQ EGKVEGDGEE EDVEADIKST TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC  180
FPPLDYNQQR PSQELVAKDL HGLEWRFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL  240
FLRGEDGELR LGVRRAAQIK SGSSFPNLCS QHLNRGTFAD VIHAISMKSV FSIYYNPRAS  300
SSEFIIPVNK FWKSLDHPFS AGMRFKMRFE TEDAAERRYT GLVTGISDMD PVRWPGSKWR  360
CLLVRWDDID ANRHSRVSPW EIEPSGSVSS SNNLLTPGLK RNRVGLPSGK PEFMVPDGIG  420
ASDFGESFRF QKVLQGQEIL GFNTVYDGVD SQNLHRSEIR RCFPGSNGSG ISAIGNVCRD  480
PVVNSDISYK SVGFGESFRF HKVLQGQEIF VSPSCRRGPT TEETQDNDGV SDAGQLSGTR  540
SGWSSLMQGY SSNSHIRPSA QVSSPSSVLM FQQASNPFPN FNPAYNNFNS QEKGQGVNNR  600
NSFVAPESYG GKVLPSATGE QSSCGRGPGS LGSFGHSNGY VQLGDSPLAA QPAFRTSQDL  660
ASSCKSSCRL FGFSLTEGQH ESNKKDNMVQ ATSPLGQGAF LPRIGEQCHS KPPAVTNAVG  720
TNCTKVSNLY AVRDMLFDIA L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OMO76331