PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO76208

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 306aa MW: 34050.2 Da PI: 9.4741

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO76208	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.5	2.6e-16	32	122	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a ++ +l+rg+l++++W++v++++ + ++ +r+ +qCk++++ ++k+yk +k++ + + ++ s++p+f++l+ OMO76208 32 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVTSSNGTQASSWPFFERLD 122 7**************************************99999***********************999999999*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MGDLMDSLTP STTPTPPSST PHSRPLPVRE DCWSEEATST LVDAWGRRYL ELNRGNLRQK 60 DWQDVADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKIE KARVTSSNGT QASSWPFFER 120 LDSLIGSSFS AKKPSPSPKL SPKPSPRLSP RIPGSPPVAL PLPLPYRRTP ASAAVVALPQ 180 KRAAADDGYF RRNYSAVAAA AAAAAAAESE EEEAEESEGE ESEGEGDEKE GMRRLARAIE 240 RFGEVYERVE GEKLRQMIEL EKQRMKFAKD LEVQRMRMFM DTQVQLERVK RGKRSSGSSG 300 EAYSSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	4e-40	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO76208