PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO76114
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GATA
Protein Properties Length: 300aa    MW: 32789.9 Da    PI: 6.1432
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO76114genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.4e-17223259135
      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  OMO76114 223 CRHCGTSEksTPMMRRGPEGPRTLCNACGLMWANKGT 259
               **********************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MDGIHGDNGS THMGNDPMQH HVHYERHHHI MNGNGVVVNV DDDDPHHHGL NPDDGDDNLE  60
EDEAGDFPSE HHPGNLSDNQ GPEIGDQLTL SFQGQVYVYD SVPPEKVQAV LLLLGGREVP  120
QGPQPGPAAI PITTPNNRAG GPQRFSVPQR LASLLRFREK RKERNFDKKI RYTVRKEVAL  180
RMQRNKGQFT SSKPNTDDSA SSWGSNQSLG GDGNGSQNQE IVCRHCGTSE KSTPMMRRGP  240
EGPRTLCNAC GLMWANKGTL RDLSKAAPQT GQSSSLSKNE EQNVNVEGDE LRVAENASGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-106GATA family protein