PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO75987
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family FAR1
Protein Properties Length: 762aa    MW: 88164.4 Da    PI: 8.2623
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO75987genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.91.1e-1524109191
      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
               ++Y +Y+k+ GF v+k++sk+  ++g+++     Csk  kr+ e+++     +++ +t+tgCkak+++ + +dg+++++ +el+H H l+p
  OMO75987  24 DYYLNYGKQKGFGVVKRTSKRD-DDGNVKYIASACSKTRKRQLESNS----FTSTRVTKTGCKAKIRLILCDDGQYQISGVELDHDHVLSP 109
               59***************99998.8899****************9888....889999******************************9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    
MDEEEIIQEP KIGMTFKSSE EAYDYYLNYG KQKGFGVVKR TSKRDDDGNV KYIASACSKT  60
RKRQLESNSF TSTRVTKTGC KAKIRLILCD DGQYQISGVE LDHDHVLSPG KARHFRCNRK  120
LSENVKRRLE INDEAGIGAS KNYHSLVVEA GGYENVTFNE KDCRNYIEKA RQTRLGAGDA  180
EAVCKYFAKM QEADPNFFHM VDVDENSRIR NLFWADGRSR AAYEVFGDVI TFDATYLTNK  240
YDMPFAPFVG VNHHGQSVLF GCGLLTKENT DSFVWLFQSW LNCMSRLHPK AIITDQCKAM  300
QNAIEIVFPN VRHRLCLWHI MNKLPEKLRG YTDYEEIKQV LQTVVYDSST ESEFENGWSL  360
MIESHNLSGN EWLGGLYRER QRWVPAYVKS SFWAGMSTTQ RSESINSFFK GYVSHKTTLK  420
QFVELYDTAL KSKVEKENLA DYQSFNSWYE CLSDYEIEKQ FQRVYTNAKF KEFQDELKGK  480
FYCNPSLVKT ENLIYEYKVV EDVKVGEKRE YIAFLVHFNE VDCEMNSDFE DKYELVLKGI  540
EELKAKVAND ELIDNRTIQR SASPSQSCAD NRVPSRTNKV LSPLVTRRRG RPSTKRKIPR  600
IEEVIRKLKN KKKVQQVKEN IGSKKSRTKK NHQQRKEVEK CEDTCLSSQN YNEMQSLESF  660
NLMESRTAGE YCMFTPLNLG ATSINTSFEV NQAPLFRGYY PPTPFAPNIY HSSQENVMGF  720
QGYINQSRSG VYGGTQQTIP SINFPQENPY TFESSKDHYP KM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1587609RRRGRPSTKRKIPRIEEVIRKLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-109FAR1 family protein