PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO75503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 720aa MW: 79049.5 Da PI: 5.8667 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 5e-20 | 60 | 115 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+ qVk+WFqN+R+++k OMO75503 60 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 115 688999***********************************************999 PP | |||||||
2 | START | 225.7 | 1.4e-70 | 243 | 463 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 ela +a++el+++a+ +ep+W++s + +n++e++++f+++ + ++ ea+r+++vv+m++ +lve+l+d+ qW++ + ka+tl+v+s+g OMO75503 243 ELAVAAMEELIRMAQMGEPLWMTSLdgttSVLNEEEYIRTFPRGIGpkptgFKCEASRETAVVIMNHINLVEILMDVH-QWSTVFSgivsKASTLDVLSTG 342 57899**********************9999************999********************************.********************** PP ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS START 89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182 galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d+ ++ p+ vR++++pSg+li++++ng+skvtw+ehv++++r +h+l++ OMO75503 343 vagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHAEGTWAVVDVSLDNLRPSPT----VRCRRRPSGCLIQEMPNGYSKVTWIEHVEVDERGVHNLYK 439 ******************************************************996....**************************************** PP HHHHHHHHHHHHHHHHHTXXXXXX CS START 183 slvksglaegaktwvatlqrqcek 206 +lv+sg+a+gak+w atl+rqce+ OMO75503 440 QLVNSGHAFGAKRWIATLDRQCER 463 **********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence |
MFQPNMMEGQ LHPLEMTQNT SESEIARMRD DEFDSTTKSG SENHEGASGD DQDAARPNKK 60 KRYHRHTQHQ IQEMEAFFKE CPHPDDKQRK ELGRELGLEP LQVKFWFQNK RTQMKTQHER 120 QENTQLRTEN EKLRADNMRY REALSTASCP NCGGPTAVGQ MSFDEHHLRL ENARLREEID 180 RISAIAAKYV GKPVVNYPLL SSPMPPRPLE FGAQPGTGEM YGAGDLLRSI SAPSEADKPM 240 IIELAVAAME ELIRMAQMGE PLWMTSLDGT TSVLNEEEYI RTFPRGIGPK PTGFKCEASR 300 ETAVVIMNHI NLVEILMDVH QWSTVFSGIV SKASTLDVLS TGVAGNYNGA LQVMTAEFQV 360 PSPLVPTRES YYVRYCKQHA EGTWAVVDVS LDNLRPSPTV RCRRRPSGCL IQEMPNGYSK 420 VTWIEHVEVD ERGVHNLYKQ LVNSGHAFGA KRWIATLDRQ CERLASVMAT NIPTGDVGVI 480 TNQDGRKSML KLAERMVISF CAGVSASTAH TWTTLSGTGA DDVRVMTRKS VDDPGRPPGI 540 VLSAATSFWL PVSPKRVFDF LRDENSRSEW DILSNGGVVQ EMAHIANGRD TGNCVSLLRS 600 ANSSQSNMLI LQESCTDPTA SFVIYAPVDI VAMNVVLNGG DPDYVALLPS GFAILPDGTA 660 ATAGGIADAG SGGSLLTVAF QILVDSVPTA KLSLGSVATV NNLIACTVER IKASLSCETA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.3 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO75503 |