PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO75239
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ZF-HD
Protein Properties Length: 272aa    MW: 30974.2 Da    PI: 4.5864
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO75239genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer77.81.4e-242883259
  ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                 e+v+Y+eC++N  +s+G + vDGC Ef++ +g   +a+ l+CaACgCHR+FHRr  + 
     OMO75239 28 ERVEYRECRRNMSISTGRYIVDGCAEFIQRRG--VNADPLQCAACGCHRSFHRRVLSA 83
                 689**************************954..569*****************9765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MADHNNYQNN NGAAGNLRRR FINRRDQERV EYRECRRNMS ISTGRYIVDG CAEFIQRRGV  60
NADPLQCAAC GCHRSFHRRV LSAENQLRRA AARFLFYNDV RPVPHQPQLP QPLRPLMPQP  120
AQMPPAPAYR RLPLPPQQIQ IRLPHEIYHA CPMGPQPLQV IRQPAPPPAP PLRRNYVQIP  180
RRVLANLPRQ PNQLPQQPQP ESESEEEEDD DDGEDDEEEE TEEDYDVTDK TGDSEIFDSE  240
IELEPGDLEG MGDDVGEVNS GSSSGGNDNK ED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.11e-13ZF-HD family protein