PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO74953

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 889aa MW: 101329 Da PI: 7.5753

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO74953	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.8	5.1e-25	94	197	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fY+eYA++vGF++ +++s++s+ +g++++++fvC+++g+++e+ +++ r +r+ ++t+Cka ++vk+++dg+w+v ++ +eH OMO74953 94 FYKEYANSVGFTTIIKASRRSRLSGKFIDAKFVCTRYGNDRESGGVqtpepvpadivtaapvkKKRGRVNRSWSKTDCKAGMHVKRRQDGRWVVRSFIKEH 194 *************************************999987789********998888889**************************** PP FAR1 86 nHe 88 nH+ OMO74953 195 NHD 197 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 889 aa Download sequence
MLPRGIDLEH PSGSGDYNKV EYRPDVNISM MDSSGDERHG RGRVSLNSIN SAGKESESAS 60 GKAYTGDEIN LNSSNNLEPH EGMEFESKEE AFTFYKEYAN SVGFTTIIKA SRRSRLSGKF 120 IDAKFVCTRY GNDRESGGVQ TPEPVPADIV TAAPVKKKRG RVNRSWSKTD CKAGMHVKRR 180 QDGRWVVRSF IKEHNHDTFA DQAYYSRGHR NFGLGNSNLF TLHAIPGRTK KTYVSMSRQS 240 GGLRKLENHK GGQSNRLYSC QVLSLEESDT KVLLDHFVCM QDQNPNFFYA IDLNEEQRLR 300 NVFWVDAKGR LDYGYFNDAV LFDTTYIKNE YKLPFVPIIG VNHHFQFLLL GCALLADETK 360 STYIWVLRAW LRAMGGQAPK VILTDHDKAL KEAVVEVFPN SRHCFCLWHV MSKIPEKLSY 420 VMGQHENFMA KFDECIFKSY TNEQFEMKWW ELVDVCNLKN DIWFQSLYED RQQWVPTYMR 480 GIFLAGISTV QRSDSVSSLF DKYLQRRTML KEFLDQYKAI LKEKSEEEAK ADFDTWHKPP 540 GLKSPSLFEK QMAHLYTNAI FKKFQVEVLG GIACHPRKES EQGGTKTFKV QDFEKNQDFI 600 VVWNDATSDI SCLCCGFEFN GFPCRHILII LQLSGVQSIP SQHILKRWTK DAKSRQTTGE 660 QSDVVETRMQ RYSDICQRAF KLGDEGSLSQ ESYNIVLNAL EEALRKCVSV NYLIQSVTEP 720 ISLQTQGPQH IEAVNQSNSA SKAVKQNNTS QKRQGFTETE ISNSGMPESW SQMGQSNIPV 780 PSVECSYESQ ESIRRMDPLN SRTPATDGYF GAQQLVQGLG LNSINPPHDA HYITQERMHG 840 MGQLHFRPQT IPTCYDIQDG LPDMDQPNLG SNQLHGMASK QLNSKDISR

Sequence ? help Back to Top

Protein Sequence Length: 889 aa Download sequence

MLPRGIDLEH PSGSGDYNKV EYRPDVNISM MDSSGDERHG RGRVSLNSIN SAGKESESAS  60
GKAYTGDEIN LNSSNNLEPH EGMEFESKEE AFTFYKEYAN SVGFTTIIKA SRRSRLSGKF  120
IDAKFVCTRY GNDRESGGVQ TPEPVPADIV TAAPVKKKRG RVNRSWSKTD CKAGMHVKRR  180
QDGRWVVRSF IKEHNHDTFA DQAYYSRGHR NFGLGNSNLF TLHAIPGRTK KTYVSMSRQS  240
GGLRKLENHK GGQSNRLYSC QVLSLEESDT KVLLDHFVCM QDQNPNFFYA IDLNEEQRLR  300
NVFWVDAKGR LDYGYFNDAV LFDTTYIKNE YKLPFVPIIG VNHHFQFLLL GCALLADETK  360
STYIWVLRAW LRAMGGQAPK VILTDHDKAL KEAVVEVFPN SRHCFCLWHV MSKIPEKLSY  420
VMGQHENFMA KFDECIFKSY TNEQFEMKWW ELVDVCNLKN DIWFQSLYED RQQWVPTYMR  480
GIFLAGISTV QRSDSVSSLF DKYLQRRTML KEFLDQYKAI LKEKSEEEAK ADFDTWHKPP  540
GLKSPSLFEK QMAHLYTNAI FKKFQVEVLG GIACHPRKES EQGGTKTFKV QDFEKNQDFI  600
VVWNDATSDI SCLCCGFEFN GFPCRHILII LQLSGVQSIP SQHILKRWTK DAKSRQTTGE  660
QSDVVETRMQ RYSDICQRAF KLGDEGSLSQ ESYNIVLNAL EEALRKCVSV NYLIQSVTEP  720
ISLQTQGPQH IEAVNQSNSA SKAVKQNNTS QKRQGFTETE ISNSGMPESW SQMGQSNIPV  780
PSVECSYESQ ESIRRMDPLN SRTPATDGYF GAQQLVQGLG LNSINPPHDA HYITQERMHG  840
MGQLHFRPQT IPTCYDIQDG LPDMDQPNLG SNQLHGMASK QLNSKDISR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO74953