PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMO74411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 214aa MW: 23727.7 Da PI: 4.6677 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45 | 1.4e-14 | 32 | 75 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e ksn +vtfsk r+g++ KA+EL+ L +a++ +i++sst + OMO74411 32 QLEKKSNLHVTFSKCRTGLFQKASELCLLSGARIGIIVLSSTPR 75 6789************************************9865 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence |
MTDDGKNGKD GNKEPAAGGK RTKGRQRIEI KQLEKKSNLH VTFSKCRTGL FQKASELCLL 60 SGARIGIIVL SSTPRQKPFC FGHPNIDKIL DQYVSETQNP TDVAVDDDDD DQDVETPIAD 120 LSGLEEIDKK FEGSVEMLEM EKKRGKDQME NNGGTFWWEE DIEGMGLEEL EVYVNALEKL 180 KKNVIVRANA LTMASVTETS SALPGFAQGF RGLQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-34 | M-type_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OMO74411 |