PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO74381
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GATA
Protein Properties Length: 347aa    MW: 38313.8 Da    PI: 6.0581
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO74381genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.73.2e-18246279134
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
               Cs+C++ kTp+WR gp g ktLCnaCG++y++ +
  OMO74381 246 CSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGR 279
               *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MEYCMEARAL KSSVRGEVTM QKTQHVVYDD FFYLNAMNGG LPTEDFSVDC FLDFNNGEFE  60
EEEEEKDSLS GSSQERVGDD DSNSNSSGLS HDSVLANELS VPDEEIAGLE WVSHFVDDSL  120
PELPLPCPVF KQQSENHAKT RFETEPEPVF VKTPCFSSVV PSKARSKMTK KPRRTWSVGS  180
MTFSESSSST TTSSSVSSSS SMTSAHVVHN PELANEFTEP PTKKQKKKPA VSASGLLIGN  240
PFQRRCSHCQ VQKTPQWRTG PLGAKTLCNA CGVRYKSGRL FPEYRPACSP TFSGDIHSNS  300
HRKVLEMRKK KELAPAAAGT GAPNSCDEVR LRLCPCFFSC SIDLAYE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-54GATA family protein