PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO73948

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HB-PHD

Protein Properties

Length: 888aa MW: 97944.5 Da PI: 4.967

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO73948	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.8	6.7e-12	820	864	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + + ++L + F++n+yp+++++e LAk+l++t +qV+ WF N R OMO73948 820 EAEKQRLYSSFKENQYPDRATKECLAKELEMTLQQVSKWFDNTRW 864 567899************************************996 PP
2	PHD	39.5	1.2e-13	458	513	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C++ fH++Cl+++l +e++p + wlC+ C++k OMO73948 458 FCAKCGSkdLSANNDIILCDGaCDRGFHQYCLQPPLLKEDIPPDdeGWLCPGCDCK 513 699*977677****66***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 888 aa Download sequence
MIKVQHMGVS PSQRKSRKGN HICPEESTSE KAQEFGSEYL LTELSENKQQ CSNAVTQNEP 60 ADIPAGKSGS GIHEPSSEYM AKNSSPEHFC KGVSGHKHTG ESICPQDVHK ETSEEKHKCG 120 SEIAQNVEDA CTSVCGLPAK NLQPSSEGLS KNGTTESSGV LPEDLSKCIQ TEELSCPQIG 180 SSEPTIDFGS GNICKELDQP PEQQQQLEFE SLPNGREKGT TAVTPNVLDQ AMQLKPENTN 240 KSHCGEHLQS HTEGVEPLGL PEEFATGDPD IEQSRLPCED MASGLQKEEK KPRYLIKHSA 300 RRKTSKAFKK KYMLRSSRSS DRVLRSKSQE KPDASEPSNN LADVGSSKQK RRTKRKKKRG 360 KGEAADEYSR IRTHLRYLLN RINYEQNLID AYSTEGWKGL SLEKLKPEKE LQRATSEILR 420 RKLKIRDLFQ RIDSLSAEGR LPESLFDSEG QIDSEDIFCA KCGSKDLSAN NDIILCDGAC 480 DRGFHQYCLQ PPLLKEDIPP DDEGWLCPGC DCKVDCIKLV NECQGTRLSI SDCWEKVFPE 540 AAPGGQNQDP NFGLPSDDSD DNDYNPDGSE TDEKDQGDES SSDESDFTST SGDLEVPANV 600 DPYLGLPSDD SEDDDFNPDN PDHDDVVKPE SSSSDFTSDS EDLGATLEGN TSQKDEGPFS 660 SSALRDSKRG KAKLGGKASL NDELTELASG EDGSTFSKKR TIERLDYKKL YDETYGNVPS 720 SSSDDENWGD TAMPRKRRKQ TAEAISAPAN GNVSASRRAL ASNNLTQSPK ESEHKSRRKT 780 RQTSKLKDAD SSPAELQGGT SVPSSSGKKA GSSSYRRLGE AEKQRLYSSF KENQYPDRAT 840 KECLAKELEM TLQQVSKWFD NTRWSYHNSP SMSAKIVSAN DITPKKNN

Sequence ? help Back to Top

Protein Sequence Length: 888 aa Download sequence

MIKVQHMGVS PSQRKSRKGN HICPEESTSE KAQEFGSEYL LTELSENKQQ CSNAVTQNEP  60
ADIPAGKSGS GIHEPSSEYM AKNSSPEHFC KGVSGHKHTG ESICPQDVHK ETSEEKHKCG  120
SEIAQNVEDA CTSVCGLPAK NLQPSSEGLS KNGTTESSGV LPEDLSKCIQ TEELSCPQIG  180
SSEPTIDFGS GNICKELDQP PEQQQQLEFE SLPNGREKGT TAVTPNVLDQ AMQLKPENTN  240
KSHCGEHLQS HTEGVEPLGL PEEFATGDPD IEQSRLPCED MASGLQKEEK KPRYLIKHSA  300
RRKTSKAFKK KYMLRSSRSS DRVLRSKSQE KPDASEPSNN LADVGSSKQK RRTKRKKKRG  360
KGEAADEYSR IRTHLRYLLN RINYEQNLID AYSTEGWKGL SLEKLKPEKE LQRATSEILR  420
RKLKIRDLFQ RIDSLSAEGR LPESLFDSEG QIDSEDIFCA KCGSKDLSAN NDIILCDGAC  480
DRGFHQYCLQ PPLLKEDIPP DDEGWLCPGC DCKVDCIKLV NECQGTRLSI SDCWEKVFPE  540
AAPGGQNQDP NFGLPSDDSD DNDYNPDGSE TDEKDQGDES SSDESDFTST SGDLEVPANV  600
DPYLGLPSDD SEDDDFNPDN PDHDDVVKPE SSSSDFTSDS EDLGATLEGN TSQKDEGPFS  660
SSALRDSKRG KAKLGGKASL NDELTELASG EDGSTFSKKR TIERLDYKKL YDETYGNVPS  720
SSSDDENWGD TAMPRKRRKQ TAEAISAPAN GNVSASRRAL ASNNLTQSPK ESEHKSRRKT  780
RQTSKLKDAD SSPAELQGGT SVPSSSGKKA GSSSYRRLGE AEKQRLYSSF KENQYPDRAT  840
KECLAKELEM TLQQVSKWFD NTRWSYHNSP SMSAKIVSAN DITPKKNN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	350	359	KRRTKRKKKR
2	351	359	RRTKRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	9e-91	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	OMO73948