PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO73922 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 22381.3 Da PI: 7.5101 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 61.2 | 2.8e-19 | 2 | 94 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C++C+vlr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++ + +r+++ ra +Pv+Gavg++++++++++q++++++l+ OMO73922 2 SCNGCRVLRKGCSENCMLRQSLqcidnPQAQANATVFVAKFFGRAGLMSFLSSVAQPQRPAV---------GRAINPVSGAVGLLWTGNWNVCQSAVQTVLR 94 6**********************99**********************************965.........7788********************9998776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence |
MSCNGCRVLR KGCSENCMLR QSLQCIDNPQ AQANATVFVA KFFGRAGLMS FLSSVAQPQR 60 PAVGRAINPV SGAVGLLWTG NWNVCQSAVQ TVLRGGTLQP LPEFSGGVSG SDLEDVAETV 120 GGNLGQCFRT REEDFVKRKG FCDVVKCEPL PNDLDLCLMI GDSNRAAKRR REDTPSEESE 180 TTTLGSRSNS GDGGSSKDGE RQLLRLFI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-52 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO73922 |