PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO73420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | SRS | ||||||||
Protein Properties | Length: 258aa MW: 27648.1 Da PI: 9.0548 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 188.7 | 2.1e-58 | 76 | 231 | 6 | 153 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsalsstklssaeskke 99 + C+dCGn+akk+C ++RCRtCCksrg+dCathvkstWvpa+kr+e+ ++ ++ ++ kr+r l+s+++ + +s +l+ ++ ++ OMO73420 76 KVCRDCGNRAKKECGFSRCRTCCKSRGYDCATHVKSTWVPASKRKEKDRKVVVIGDDDGGGGgggssgsSSCGGKRPRILSSTSNGTPKSLNLEAGNIHQD 176 57********************************************9888877766665544667776667778999999***************998887 PP DUF702 100 letss.lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + +++ lP +v+++avfrc++v++++dge+e+aYq++v+i+GhvfkG+Ly++G++ OMO73420 177 SRFKEsLPGQVRAPAVFRCIQVTAISDGEAEVAYQATVNISGHVFKGFLYNKGVD 231 776544***********************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence |
MLGLHNIFLI APPQQNQQQP APPPPPPPHQ QPFNQGYNLS DTNIWTLKRS STQEPPVCQK 60 KDGVLNGVEG DDGRFKVCRD CGNRAKKECG FSRCRTCCKS RGYDCATHVK STWVPASKRK 120 EKDRKVVVIG DDDGGGGGGG SSGSSSCGGK RPRILSSTSN GTPKSLNLEA GNIHQDSRFK 180 ESLPGQVRAP AVFRCIQVTA ISDGEAEVAY QATVNISGHV FKGFLYNKGV DVKNAFPCIS 240 KMLFESSSSG NTFAASGD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.1 | 7e-48 | SRS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO73420 |