PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO72500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ARF
Protein Properties Length: 697aa    MW: 76913 Da    PI: 7.2485
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO72500genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23109210199
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +++ l+v
  OMO72500 109 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAENGDLCV 205
               89****************************996555555..89***********************************************..4488999** PP

               EEE-S CS
        B3  95 kvfrk 99 
               +++r+
  OMO72500 206 GIRRA 210
               **997 PP

2Auxin_resp113.71.7e-37278361183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a++++ FevvY+Prast+eF+vk++ +++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
    OMO72500 278 AATLAANGQQFEVVYYPRASTPEFCVKASLMKAALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPLRWPDSPWRLLQ 361
                 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    
MEKCLDSQLW HACAGGMVQM PSINSKVFYF PQGHAEHACG PVDFRNSPRI PAYILCRVAA  60
VKFMADPETD EVFAKIRLIP VTSHEPDFEE DGINGGIHGN ETQEKPASFA KTLTQSDANN  120
GGGFSVPRYC AETIFPRLDY SADPPVQTIL AKDVHGETWK FRHIYRGTPR RHLLTTGWST  180
FVNHKKLVAG DSIVFLRAEN GDLCVGIRRA KRGIGGGPES SSGWNTTSGN CIVPYGGFSA  240
FLREDENKLM RNGSSNGLNS NSNMMGKRKV RPEQVIEAAT LAANGQQFEV VYYPRASTPE  300
FCVKASLMKA ALQIRWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPL RWPDSPWRLL  360
QVTWDEPDLL QNVKRVSPWL VELVSNMPAI HLSPFSPPRK KLRLPQHPDF PLEGQLPMPT  420
FSGNLLGASS PFGCLPDHTP AGMQGARHAH YGRSFSDLHL NKLQSGLFPA GFPPPDYTAT  480
PNRTSNGCPI IQKPSMSETV SCVLTMAHST QNSKKTSDAK TPQLMLFGQP ILTEQQISLS  540
CSGDTVSPVL TGNSSSDGNL EKTANVSDGS GSALHQQGQP ERSSCEGLPW FKDNRQEAEA  600
KLEKGHCKVF MESEDVGRTL DLSLLCSYDE LYRKLADMFG IESSETLSHL LYRDIKGAVK  660
QIGDEPFSDF MKNARRLTIL MDSSSDNVGE YRGRNTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein