PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO72500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | ARF | ||||||||
Protein Properties | Length: 697aa MW: 76913 Da PI: 7.2485 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.3 | 1.4e-23 | 109 | 210 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + +++ l+v OMO72500 109 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAENGDLCV 205 89****************************996555555..89***********************************************..4488999** PP EEE-S CS B3 95 kvfrk 99 +++r+ OMO72500 206 GIRRA 210 **997 PP | |||||||
2 | Auxin_resp | 113.7 | 1.7e-37 | 278 | 361 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a++++ FevvY+Prast+eF+vk++ +++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+ OMO72500 278 AATLAANGQQFEVVYYPRASTPEFCVKASLMKAALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPLRWPDSPWRLLQ 361 68899*****************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 697 aa Download sequence |
MEKCLDSQLW HACAGGMVQM PSINSKVFYF PQGHAEHACG PVDFRNSPRI PAYILCRVAA 60 VKFMADPETD EVFAKIRLIP VTSHEPDFEE DGINGGIHGN ETQEKPASFA KTLTQSDANN 120 GGGFSVPRYC AETIFPRLDY SADPPVQTIL AKDVHGETWK FRHIYRGTPR RHLLTTGWST 180 FVNHKKLVAG DSIVFLRAEN GDLCVGIRRA KRGIGGGPES SSGWNTTSGN CIVPYGGFSA 240 FLREDENKLM RNGSSNGLNS NSNMMGKRKV RPEQVIEAAT LAANGQQFEV VYYPRASTPE 300 FCVKASLMKA ALQIRWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPL RWPDSPWRLL 360 QVTWDEPDLL QNVKRVSPWL VELVSNMPAI HLSPFSPPRK KLRLPQHPDF PLEGQLPMPT 420 FSGNLLGASS PFGCLPDHTP AGMQGARHAH YGRSFSDLHL NKLQSGLFPA GFPPPDYTAT 480 PNRTSNGCPI IQKPSMSETV SCVLTMAHST QNSKKTSDAK TPQLMLFGQP ILTEQQISLS 540 CSGDTVSPVL TGNSSSDGNL EKTANVSDGS GSALHQQGQP ERSSCEGLPW FKDNRQEAEA 600 KLEKGHCKVF MESEDVGRTL DLSLLCSYDE LYRKLADMFG IESSETLSHL LYRDIKGAVK 660 QIGDEPFSDF MKNARRLTIL MDSSSDNVGE YRGRNTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO72500 |