PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO72119

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 793aa MW: 90717.4 Da PI: 7.2883

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO72119	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.5	1.7e-31	89	180	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ ++ eHnHel+p OMO72119 89 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVREHNHELVP 180 9*************************************998888545677889*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence
MDAEVVQFDI GLGGGGSSGR DGDDDANIGF DMDEDMADSP APSSIFGSNS NGGGFGRAGS 60 EVYLPEGDLL DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF 120 VCAKEGFRNL NEKRTKDREI KRPRTITRVG CKASLSVKMQ DSGKWVVSGF VREHNHELVP 180 PDQVHCLRSH RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR 240 NNRQRSLEGD IQLLLDYLKQ MQAENPNFFY AVQGDEDQAL TSNVFWADPR ARMNYTYFGD 300 TVTFDTTYRS NRYRLPFAPF TGVNHHGQPV LFGCAFLINE SEASFVWLFK TWLTAMSGRP 360 PVSITTDHDA IIRSAIMQVF PETRHRFCKW HIFKKCQEKL SHVFLKHPAF EADFHKCVNL 420 PESTEEFESC WLSLVDRYEL RDHEWLQMIY EDRRQWVPVY LRDTFFAEMS ITQRSDSMNS 480 YFDGFVNAST NLNQFFKLYE KALESRNEKE VKADYDTMNT SPALKTPSPM EKQASELYTR 540 KLFTRFQEEL VGTLTFMASK SDDDGDIITY QVAKFGEDHR AYYVKFNVLE MKASCSCQMF 600 EFSGLLCRHV LAVFRVTNVL TLPSHYILKR WTRNAKSSVI LEERASDVYT SYLESHTVRY 660 NTLRHEAFKF VDEGSKSLET YNVAIGALKE AAKRVARATK NEGRPTMVNG RRGDSARDAS 720 RANISNHKMP SQPLSEDDMD KKIRELTSEL EYASRKCDVY RANLLSVLKD IEDHKLQLSI 780 KVQNIKISIK DGI

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence

MDAEVVQFDI GLGGGGSSGR DGDDDANIGF DMDEDMADSP APSSIFGSNS NGGGFGRAGS  60
EVYLPEGDLL DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF  120
VCAKEGFRNL NEKRTKDREI KRPRTITRVG CKASLSVKMQ DSGKWVVSGF VREHNHELVP  180
PDQVHCLRSH RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR  240
NNRQRSLEGD IQLLLDYLKQ MQAENPNFFY AVQGDEDQAL TSNVFWADPR ARMNYTYFGD  300
TVTFDTTYRS NRYRLPFAPF TGVNHHGQPV LFGCAFLINE SEASFVWLFK TWLTAMSGRP  360
PVSITTDHDA IIRSAIMQVF PETRHRFCKW HIFKKCQEKL SHVFLKHPAF EADFHKCVNL  420
PESTEEFESC WLSLVDRYEL RDHEWLQMIY EDRRQWVPVY LRDTFFAEMS ITQRSDSMNS  480
YFDGFVNAST NLNQFFKLYE KALESRNEKE VKADYDTMNT SPALKTPSPM EKQASELYTR  540
KLFTRFQEEL VGTLTFMASK SDDDGDIITY QVAKFGEDHR AYYVKFNVLE MKASCSCQMF  600
EFSGLLCRHV LAVFRVTNVL TLPSHYILKR WTRNAKSSVI LEERASDVYT SYLESHTVRY  660
NTLRHEAFKF VDEGSKSLET YNVAIGALKE AAKRVARATK NEGRPTMVNG RRGDSARDAS  720
RANISNHKMP SQPLSEDDMD KKIRELTSEL EYASRKCDVY RANLLSVLKD IEDHKLQLSI  780
KVQNIKISIK DGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO72119