PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO71632
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 233aa    MW: 25413.9 Da    PI: 6.8672
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO71632genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601345.9e-42771761100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q++ l+a+la++++e
  OMO71632  77 PCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKSLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSDLQAQLAKTQAE 176
               7***********************************************************************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MENKEKIAVS PISVSTPFSY SPSSSSSPPP QYSPGFSSPN NSQSSDNSIT KSHHQAPVLL  60
PPPTPASPPS PPVVLSPCAA CKILRRRCVE KCVLAPYFPP TEPYKFTIAH RVFGASNIIK  120
SLQELPESQR ADAVSSMVYE ASARIRDPVY GCAGAICQLQ KQVSDLQAQL AKTQAELVTM  180
QCQQANLLAL ICMEMTQSKE LPNSSHQQQP YNMDTTCFID DTNLASAWEP LWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-69LBD family protein