PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO71596

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

AP2

Protein Properties

Length: 491aa MW: 53636.5 Da PI: 7.9097

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO71596	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.2e-17	172	221	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OMO71596 172 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 221 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MLDLNLDIVS SESSSDETKM LVLPEKAAVR TLSTPQMEDS GSTNSSIINA DEVPSSNAGD 60 ENSSNNASPF IFDILKREDT TNAIKLEKDK NSSSDFVTHQ LFPVAGEKGG LELEFGSSGN 120 FVKDNNKSVA SRPQWLNLSY AESNGEGEAE LKSVQLKPQP RKSRRGPRSR SSQYRGVTFY 180 RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYEEDMKQM 240 KQMSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DIAAMKCNGR 300 EAVTNFEPST YEGEITNAGG SGNCHNLDLS LGISSPSVAL KGSNNAGDFH FHQAANARSE 360 RQLFESSAST SAGVQPQHCV TIAAAAKHPP ILPGVFHGLL PNNEERVTEK KVEAVPTTRF 420 SNWAWQMQSN GNITATPLFP LAASSGFSSS NIATASSSTA LPFLNPVHQN VCVLTPATST 480 NNNPHFPSYR S

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MLDLNLDIVS SESSSDETKM LVLPEKAAVR TLSTPQMEDS GSTNSSIINA DEVPSSNAGD  60
ENSSNNASPF IFDILKREDT TNAIKLEKDK NSSSDFVTHQ LFPVAGEKGG LELEFGSSGN  120
FVKDNNKSVA SRPQWLNLSY AESNGEGEAE LKSVQLKPQP RKSRRGPRSR SSQYRGVTFY  180
RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYEEDMKQM  240
KQMSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DIAAMKCNGR  300
EAVTNFEPST YEGEITNAGG SGNCHNLDLS LGISSPSVAL KGSNNAGDFH FHQAANARSE  360
RQLFESSAST SAGVQPQHCV TIAAAAKHPP ILPGVFHGLL PNNEERVTEK KVEAVPTTRF  420
SNWAWQMQSN GNITATPLFP LAASSGFSSS NIATASSSTA LPFLNPVHQN VCVLTPATST  480
NNNPHFPSYR S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	2e-93	AP2 family protein

Link Out ? help Back to Top
Ensembl	OMO71596