PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO71367
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family AP2
Protein Properties Length: 414aa    MW: 45942.4 Da    PI: 9.3661
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO71367genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.6e-1364120155
       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
               s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  OMO71367  64 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 120
               57*******************6666777775555599******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    
MASTSSSDPG MKAEASGGEN SETVIANDQL LLYRGLKKAK KERGCTAKER ISKMPPCTAG  60
KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQGA YDDEEAAARA YDLAALKYWG  120
PGTLINFPVT DYARDLEEMQ NVSREDYLAS LRRKSSGFSR GISKYRGLSS RWDSSFGRVA  180
GSEYFNSMHY SDDPATESDY IGGFCIDRKI DLTGYIKWWG TNKTRQAESG TKLSEDTKHA  240
CPEDIGSELK TSEWAVQPTE PYQMPRLGTS LERIKRKGSS VSALSILSRS ADFKSLKDKA  300
LKKKENSTDN DENENKNTIN KMDHGKAAEK SVNHDTGSER LGATLAMSGG LSLQKNVFPL  360
TPFLSAPLLT NYNTIDSLVD PVLWTSLVPV LPSGPSRNPE VGISLKAFSL KELE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-153AP2 family protein