PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO71225
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ARF
Protein Properties Length: 800aa    MW: 88251.7 Da    PI: 6.5475
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO71225genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.6e-24166267199
               EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
               f+k+lt sd++++g +++p++ ae++      ++++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + +++el++++
  OMO71225 166 FCKTLTASDTSTHGGFSVPRRAAEDCfppldYKQTRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVAGDAVLFL--RGEDGELRLGI 264
               99****************************8444556789************************************************..449999***** PP

               E-S CS
        B3  97 frk 99 
               +r+
  OMO71225 265 RRA 267
               996 PP
2Auxin_resp1218.7e-40292373182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +a+a+stks+F+v+Y+Pras++eFv++++k+ k++++++++G+Rfkm+fe++ds+err+sG+v+g+ d+dp+rWpnSkWr+L
    OMO71225 292 VANALSTKSMFHVFYSPRASHAEFVIPFQKYIKSITNPLCAGTRFKMRFEMDDSPERRCSGIVRGLGDSDPYRWPNSKWRCL 373
                 689******************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    
MEIDLNHAVN EVEKTAVCNG DCDKASACVY CLSSSSSSCS SNSASPPSSS SIYLELWHAC  60
AGPLTSLPKK GNVVVYFPQG HLEQVASASP FSPLEIPTFD LPPQIFCKVV NVQLLANKEN  120
DEVYTQVTLL PQPELGGPNL EAKQLDELGL DEGGGVSPTK STPHMFCKTL TASDTSTHGG  180
FSVPRRAAED CFPPLDYKQT RPSQELVAKD LHGVEWRFRH IYRGQPRRHL LTTGWSIFVS  240
QKNLVAGDAV LFLRGEDGEL RLGIRRAVRP RNGLPDSVMA KQNSYPNVLS PVANALSTKS  300
MFHVFYSPRA SHAEFVIPFQ KYIKSITNPL CAGTRFKMRF EMDDSPERRC SGIVRGLGDS  360
DPYRWPNSKW RCLMVRWDED IVSDHQERVS PWEIDPSVSL PPLSIQSSPR LKKLRTGLQA  420
APPDTPITGG GGFLDFEESV RSSKVLQGQE NVGFISPIYG CDVVNRPLDF EMQSSAHQSL  480
ASTDIGKTNI SELMRAHSTA YTGFAESNRF PEVLQGQEIC PLRSLTQKAD LNLGVWAKTK  540
LGCSSYNMHQ APKSSCYPLA SEGLRHMYFP YGDFYKTGQD PAMNSYASII PRGNIPFNAS  600
SIKTGVIVNG VRKPNSLNEH KALENISSTA FRKTVGNQQE DCFKENVTGC KLFGFSLTAE  660
SPTPNSQNSG KRSCTKVHKQ GSLVGRAIDL SRLNGYDDLM TELERLFSME GLLRDPDKGW  720
RVLYTDSEND VMVVGDDPWH EFCDVVSKIH IYTQEEVEKM TVGMASEDTQ SCLDQAPVIM  780
EGSKSSSVGQ PDSSPTVIRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein