PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO71196 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 22452.5 Da PI: 6.9906 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.9 | 7e-43 | 42 | 141 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la++++e OMO71196 42 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAE 141 7**********************************************************************************************99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence |
MLKMEYTEAT PTTPSPRSLS PNSSNSSSSS APPQTPPVVI SPCAACKILR RRCADKCVLA 60 PYFPPTEPAK FTIAHRVFGA SNIIKFLQEL PESQRADAVS SMVYEASARI RDPVYGCAGA 120 ICQLQKQVNE LQAQLAKAQA EVVNMQLQHA NLLALLCMEV AHSPHQPNQS VDTFINSPQS 180 YQSNPSNFLE DNTNLGSLWD HPLWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-71 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO71196 |