PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO70981
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 339aa    MW: 38251.5 Da    PI: 6.834
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO70981genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12201226126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               y   +C+++ +tG+C yGd+CkF+H+
  OMO70981 201 YQPDICKDYKETGYCGYGDSCKFMHD 226
               67789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MTDSSEPQSP EKGTQQSETE PQQSEQVCNF FRKPTKGKNI RKRAVNDDDD EESKNEASLL  60
QNLKKAAKPD NKLYFSTGRS KSADVAADSN TEPDKPIFQF ESSKEIQVQS DSRATATLET  120
ETEFTKDARA IREKVLKRAE EALKGKGTSS GGEKLYTGMH GYVDHKAGFR RELTVASEKA  180
GGSHGPLRAS AHIRVTARFD YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQLEKEW  240
EEAEKARKRN LAMGLDDDDE AGVNQSDDDD DDSLPFACFI CRKPFVDPVV TKCKHYFCEH  300
CALKHHQKNK KCFVCNQPTL GMFNAAHEIR KKMAEEGKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-152C3H family protein