PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO70791 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | LBD | ||||||||
Protein Properties | Length: 167aa MW: 18549 Da PI: 6.4958 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 62.6 | 9.8e-20 | 11 | 92 | 1 | 79 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer...edamsslvyeAearardPvyGavgv 79 +CaaCk+ + +C +dC++a+yfp++ + ++ nvh Gas +l +lk++ + +r ++m+++++e ++ dP +Ga g+ OMO70791 11 PCAACKHNGWRCGADCFFAEYFPSDCETQYLNVHNRLGASGMLDVLKKVTPARRvdvGIIMHTIIFECNCLDVDPLQGASGL 92 7***************************************************99555678*******************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence |
MAGDGDHIMK PCAACKHNGW RCGADCFFAE YFPSDCETQY LNVHNRLGAS GMLDVLKKVT 60 PARRVDVGII MHTIIFECNC LDVDPLQGAS GLDEAFRNLR TEMTAAGIVS ACNEIAKYSE 120 EIARFRQNKH KEQLNHGAQT GTVSFDDIIQ GRGIPNFEEP ATKRQRN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-17 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO70791 |