PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO70790

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

LBD

Protein Properties

Length: 280aa MW: 31406.9 Da PI: 5.9987

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO70790	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.5	1.7e-41	19	118	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ e+++am++++y+++ara+dPv G++++i++lq+q++ ++ael+l+ ++ OMO70790 19 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLNPPEKDIAMRTIMYQSDARANDPVGGCFKIIQDLQRQIDYSQAELDLVYHQ 118 7*********************************************************************************************999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MSNIITTTRS GGSNGTTQAC AACKYQRRKC APDCILAPYF PHDRQRQFLN AHKLFGVSNI 60 TKIIKNLNPP EKDIAMRTIM YQSDARANDP VGGCFKIIQD LQRQIDYSQA ELDLVYHQLA 120 ICRSAAHQAQ HHHHHHLAQI QEPTEGVDNS TLGGGGCDLV NAAAAAVAVA ADPLNFYYVQ 180 EPQDQQFAVN DHNHHDQLIQ ENYDSWGIQE STALMSSLNV KQGFIKESCH DDHDHDNING 240 IEVKPDLDQV PYDHHDQIKF EADELVERRF VPSTQLVMSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-63	LBD family protein

Link Out ? help Back to Top
Ensembl	OMO70790