PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO70760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 21226.5 Da PI: 4.4333 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 70.8 | 2.9e-22 | 22 | 119 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer...edamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+ + +C +dC++a+yfp++ + ++ nv FGa +l+ll++l +++r +am+sl++e+++r+ P Ga+g+ ++ ++ ++ +k+ ++ OMO70760 22 PCAACKHNGWRCGADCFFAEYFPSDCETQYLNVDNRFGAWGMLNLLNELTPTRRvdvGIAMHSLIFESNCRVVSPSTGATGLNMAARSLMRDAKTAAE 119 7****************************************************9666679**********************9998887777766554 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence |
MAGDGKECEE KIGADGDHNM KPCAACKHNG WRCGADCFFA EYFPSDCETQ YLNVDNRFGA 60 WGMLNLLNEL TPTRRVDVGI AMHSLIFESN CRVVSPSTGA TGLNMAARSL MRDAKTAAEI 120 VSACNEIAKY SEEIARFRQN QHKEQLNHGS QTGTVSFDDI IRGRGIHFEE DPLPSDLEDA 180 ETDDDVLNAP DY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-16 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO70760 |