PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO70649

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

AP2

Protein Properties

Length: 519aa MW: 57780.1 Da PI: 6.3493

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO70649	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.7	5.2e-12	229	285	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g OMO70649 229 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 285 78*****************433.44555535555.779999************98 PP
2	AP2	48.3	2.6e-15	328	379	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OMO70649 328 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 379 78**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MGSFLFLLFD FSDNDFLADW RYENGIGGAT ASEEGPKLED FLGCCYSNSP SEDQTKVYCQ 60 TQQQEDQTQN NVSTRINVNV APCYNGDMEN GEDFSNPSSL IQAFHYNENT QTLIPSENLH 120 QCDPNPNHNQ NNGIYHVPFD GATSVSGFKS WLRQTPFSSG KNGSSTEGSN NNFQTLSLTM 180 SPTSQNGSST IDAIAPLEVV DTRKRSGGKT LAKEPVPRKS IDTFGQRTSQ YRGVTRHRWT 240 GRYEAHLWDN SCRKEGQTRK GRQGGYDKEE KAARAYDLAA LKYWGPTTHI NFPLSTYEKE 300 LEEMKNMTRQ EFVAHLRRKS SGFSRGASVY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF 360 STQEEAAEAY DIAAIKFRGT SAVTNFDISR YDVKRICSSS TLIGGDLAKR SSKDSASHAI 420 EDYNSCASST SQPPLAITNG EASDELAEMV WSANSDDLQQ QHQNGNTNND ATLATSSSRN 480 SSNNFNLGIG GDFSQGYFSL QVPKYENHHQ VPMFALWNE

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MGSFLFLLFD FSDNDFLADW RYENGIGGAT ASEEGPKLED FLGCCYSNSP SEDQTKVYCQ  60
TQQQEDQTQN NVSTRINVNV APCYNGDMEN GEDFSNPSSL IQAFHYNENT QTLIPSENLH  120
QCDPNPNHNQ NNGIYHVPFD GATSVSGFKS WLRQTPFSSG KNGSSTEGSN NNFQTLSLTM  180
SPTSQNGSST IDAIAPLEVV DTRKRSGGKT LAKEPVPRKS IDTFGQRTSQ YRGVTRHRWT  240
GRYEAHLWDN SCRKEGQTRK GRQGGYDKEE KAARAYDLAA LKYWGPTTHI NFPLSTYEKE  300
LEEMKNMTRQ EFVAHLRRKS SGFSRGASVY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF  360
STQEEAAEAY DIAAIKFRGT SAVTNFDISR YDVKRICSSS TLIGGDLAKR SSKDSASHAI  420
EDYNSCASST SQPPLAITNG EASDELAEMV WSANSDDLQQ QHQNGNTNND ATLATSSSRN  480
SSNNFNLGIG GDFSQGYFSL QVPKYENHHQ VPMFALWNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-130	AP2 family protein

Link Out ? help Back to Top
Ensembl	OMO70649