PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO70645
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 529aa    MW: 58866.9 Da    PI: 5.722
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO70645genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS264.83e-811465212374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               ++lL  c++a+++g+l+++q+lL  l+elas++gd+++Rla + ++AL ++l++s+ +     +p + ++++ +    +l  f+evsP++ f + +aN  I
  OMO70645 146 EQLLNPCVTAITAGNLTRVQHLLYVLNELASSTGDANHRLADHGLRALTHHLSSSSAS----TSPVTFASTEPKFFQRSLLKFYEVSPWFAFPNNIANASI 242
               689**************************************************93333....33444444445555556666******************* PP

      GRAS 103 leavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvakrledl 189
               l+ +++e    + +Hi+D+++s+G+QWp+Ll+aL+ Rp ++pp ++iT+v++ +++               +  +rL  fA+++++++e+n l  + le+l
  OMO70645 243 LQILAQEpdkkRNLHILDIGVSHGVQWPTLLEALTHRPgGPPPLVKITVVAATAENnqiidtpfsVGPPGPNFYSRLPGFAKSMNINLEINRLENHPLENL 343
               ****9998887889************************55566********97777889998887677788999******************9999***** PP

      GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpreseerikvEr 287
               + + ++  pgE+l+++ +++lh+l    ++++++r+e+Lk+++sl P+ v+++e+++++   n ++F+++f++ +ey + ++ds+++ +    + r + Er
  OMO70645 344 NAQIIEHLPGETLIICAQFRLHHLN---HNTPDQRTEFLKVLRSLDPNGVILSENNMECscsNCGDFATGFSRRVEYLWRFLDSTSSAF----KGRESEER 437
               ************************8...77777788*******************9665437888********************7775....67777777 PP

      GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
               ++++ e+ ++++++g++    +e +ekW er++++GF    ++e+a + a++llrk++ ++++rvee++g++ l Wk++p+ ++S W+
  OMO70645 438 RVMEGEAAKALTNQGEM----NEGKEKWCERMRSVGFMGEIFGEDAIDGARALLRKYDsNWEMRVEEKDGCVGLWWKGQPVSFCSLWK 521
               7778889********99....9************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    
MTLEETEPNP TSDHLLDWLD DSVSFLPSLL DDPYNPGEIN GSPWWDQNQD IGHDLINIGA  60
TTATSIDSPI IAAAAENTTN NGLLQSNSAI PNPSLPSNSS KKRKLSDEPD PKTSQNHQQK  120
KNQSKKNSNK ANNCNNGNNK EGRWAEQLLN PCVTAITAGN LTRVQHLLYV LNELASSTGD  180
ANHRLADHGL RALTHHLSSS SASTSPVTFA STEPKFFQRS LLKFYEVSPW FAFPNNIANA  240
SILQILAQEP DKKRNLHILD IGVSHGVQWP TLLEALTHRP GGPPPLVKIT VVAATAENNQ  300
IIDTPFSVGP PGPNFYSRLP GFAKSMNINL EINRLENHPL ENLNAQIIEH LPGETLIICA  360
QFRLHHLNHN TPDQRTEFLK VLRSLDPNGV ILSENNMECS CSNCGDFATG FSRRVEYLWR  420
FLDSTSSAFK GRESEERRVM EGEAAKALTN QGEMNEGKEK WCERMRSVGF MGEIFGEDAI  480
DGARALLRKY DSNWEMRVEE KDGCVGLWWK GQPVSFCSLW KLDIKVEES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101125KKRKLSDEPDPKTSQNHQQKKNQSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-163GRAS family protein