PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO70604
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 264aa    MW: 27486.1 Da    PI: 8.5011
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO70604genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-096893227
              -S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
              kt+lC+ f+    Ck+Gd+C+FaHg+
  OMO70604 68 KTRLCNKFSTQEGCKFGDKCHFAHGE 93
              8*********99************96 PP
2zf-CCCH35.31.9e-11231256127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +kt+lC +f + G C +GdrC+FaHg+
  OMO70604 231 FKTKLCENFTK-GSCTFGDRCHFAHGM 256
               69*********.*************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
PDILGFSSFH STSGCPFGES CHFLHYVPGG FKAVSQMLGN SPALPAAAAR NSVVPPSFPD  60
GSSPPAVKTR LCNKFSTQEG CKFGDKCHFA HGEWELGKPT GPAYEDPRAM GPMSGRMGGR  120
MEPPSQGVGA AASFGASATA KISIDASLAG AIIGKNGVNS KHICRVTGAK LSIRENESDP  180
SSRNIELEGT FDQIKQASAM VRELILNVGS GSGAGMKNPS MGGGSGPANN FKTKLCENFT  240
KGSCTFGDRC HFAHGMDELR KPAM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-48C3H family protein