PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO70382
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ARF
Protein Properties Length: 912aa    MW: 100736 Da    PI: 6.412
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO70382genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.1e-23130231199
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l++
  OMO70382 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDKNQLLL 226
               99*****************************8544444..48************************************************..7888889** PP

               EEE-S CS
        B3  95 kvfrk 99 
               +++r+
  OMO70382 227 GIRRA 231
               **997 PP
2Auxin_resp118.93.9e-39256339183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldp rWp S+Wrs+k
    OMO70382 256 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPSSHWRSVK 339
                 79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    
MRLSSAGFNP QTQEDMAGEK RVLNSELWHA CAGPLVSLPP VGSRVVYFPQ GHSEQVAAST  60
NKEVDAHIPN YPSLPPQLIC QLHNVTMHAD IETDEVYAQM TLQPLTPQEQ KEAYLPAELG  120
TPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQQPPAQEL IARDLHDNEW  180
KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWND KNQLLLGIRR ANRPQTVMPS  240
SVLSSDSMHL GLLAAAAHAA ATNSRFTIFY NPRASPSEFV IPLAKYVKAV YHTRVSVGMR  300
FRMLFETEES SVRRYMGTIT GISDLDPARW PSSHWRSVKV GWDESTAGER QPRVSLWEIE  360
PLTTFPMYPS PFPLRLKRPW PPGLPSFHGI KDDDLGMNSP LMWLRGDADR GMQSLNFQGI  420
GVTPWMQPRL DASMLGLQTD MYQAMAAAAL QEMRGVDSSK PATASLLQFQ QPQNLPLRPA  480
ALMQPQMLQQ SQPQAFLQGV EDNQHQSQAQ AQAQTQQHLL QQQLQHQNSF NSQQQHQHQQ  540
QPQPQHPLSQ QHQQLVEHPQ IHSTVSTMSQ YASATQSQSS PLQGIPSLCQ QQSFSDSNGN  600
PVTSPIVSPL HSLLGSFPQD ESSSLLNLPR SSPVITSAAW PSKRAAVEVL SSGSPQCVVA  660
QVEQLGPPQT NMSSNSISLP PFPGRECSID QEGGNDPQSH LLFGVNIEPS SLLLQNGMSS  720
LRGVGSDSDS TTIPFSSNYM SAAGTDFSVN PAMTPSSCID ESGFLQSPEN GGQGNLQSRT  780
FVKVYKSGSF GRSLDISKFS SYNELRSELA RMFGLEGQLE DPLRSGWQLV FVDRENDVLL  840
LGDDPWPEFV NSVWCIKILS PQEVQQMGKR GLELLNSVPV QRLSNGTCDD YVSRQDSRNL  900
SSGIASVGSL DY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0ARF family protein