PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO70222
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ZF-HD
Protein Properties Length: 343aa    MW: 36956.1 Da    PI: 7.678
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO70222genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.21.7e-3292147359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                   vrY+eClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+e + 
     OMO70222  92 LVRYRECLKNHAAAMGGTATDGCGEFMPS-GEEGTIEALTCSACNCHRNFHRKEIDG 147
                  68**************************9.999********************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MELSSQEGEI PIPLNSTTYG GGHGHGHMIH HDHPSSLPHN HHNHNHNHII ATSVAAAAAA  60
AAAAAQIPSA GATTNLDDDD DHSHHVPYSK KLVRYRECLK NHAAAMGGTA TDGCGEFMPS  120
GEEGTIEALT CSACNCHRNF HRKEIDGEPC DFYPLHSPHH PLSRVGRKLI LGPHHHHHKG  180
ILPPEALGYP TATGTLIHSR AASAAVAPTP HQMIMSYNMM GSLPSESDEQ DDVGGGGGGG  240
GGGGGGGVVS RQQPHHHQLV KKRFRTKFSQ EQKEKMLNFA EKVGWKIQKQ EESVVQQFCQ  300
EIGVKRRVLK VWMHNNKHNL AKKNPSSENN TNGNTTATTT TAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.19e-73ZF-HD family protein