PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO70134

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SBP

Protein Properties

Length: 597aa MW: 64994.4 Da PI: 8.3173

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO70134	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.1	2.2e-42	175	250	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dl++ k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh lsefD++krsCr+rLa+hnerrrk+q OMO70134 175 CQVYGCKKDLTSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLSEFDDGKRSCRKRLAGHNERRRKPQ 250 **************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MESWSYVSGE KGSVSDAAIS PSGSYARNRN VLMNWELKGS YGYSNNVPVS GQQSIENHAF 60 GELGYGELVG KQLPNDSIGN IFSTKFSGGR TVNSVMASLN TFSGEDESTS KLSSSVVDSS 120 SRDSSLIDLK LGRFPNHRDG QNSSFSIGAP ILSSSESSTP PKRVRAGVNS HTAYCQVYGC 180 KKDLTSSKDY HKRHKVCEVH SKTAKVIVNG IEQRFCQQCS RFHLLSEFDD GKRSCRKRLA 240 GHNERRRKPQ GGIHSGRTGR LFQQYNGNKT KLNYILFYII YATKLDKDVM VCLLCVVNKR 300 SSIVCFAGGR FHGTMLTTAS FICQDILPSG LLHPEKYVTN EWSKRIKVED GTDYGPLSAI 360 SIANGNFQLK SPYPSSGIDK LFPSFHDNGA NTTTGSMLSE NNARYPHDFG GLNSGSRPLF 420 QDTSLGSEDI NVFDAASTIQ GLSGISDSGC ALSLLSSQSQ NSSTHSSGIP MSRSLVISGS 480 HTHYNMSHVS EKLIGISSQA STTGVSNKFS SSGMNSTEGS HLGPLLISDG NETANFDITN 540 GIYQGSEFIN TKDRLSCEDG PTIDLLQLSS QLLRVEHQRQ SMQAKQENET FCCLRIT

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MESWSYVSGE KGSVSDAAIS PSGSYARNRN VLMNWELKGS YGYSNNVPVS GQQSIENHAF  60
GELGYGELVG KQLPNDSIGN IFSTKFSGGR TVNSVMASLN TFSGEDESTS KLSSSVVDSS  120
SRDSSLIDLK LGRFPNHRDG QNSSFSIGAP ILSSSESSTP PKRVRAGVNS HTAYCQVYGC  180
KKDLTSSKDY HKRHKVCEVH SKTAKVIVNG IEQRFCQQCS RFHLLSEFDD GKRSCRKRLA  240
GHNERRRKPQ GGIHSGRTGR LFQQYNGNKT KLNYILFYII YATKLDKDVM VCLLCVVNKR  300
SSIVCFAGGR FHGTMLTTAS FICQDILPSG LLHPEKYVTN EWSKRIKVED GTDYGPLSAI  360
SIANGNFQLK SPYPSSGIDK LFPSFHDNGA NTTTGSMLSE NNARYPHDFG GLNSGSRPLF  420
QDTSLGSEDI NVFDAASTIQ GLSGISDSGC ALSLLSSQSQ NSSTHSSGIP MSRSLVISGS  480
HTHYNMSHVS EKLIGISSQA STTGVSNKFS SSGMNSTEGS HLGPLLISDG NETANFDITN  540
GIYQGSEFIN TKDRLSCEDG PTIDLLQLSS QLLRVEHQRQ SMQAKQENET FCCLRIT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	245	271	RRRKPQGGIHSGRTGRLFQQYNGNKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	9e-45	SBP family protein

Link Out ? help Back to Top
Ensembl	OMO70134