PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO70040

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 613aa MW: 69984.2 Da PI: 5.1981

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO70040	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.1	2.7e-10	409	454	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +WT+eEd+ l+ v++ G g+W Ia +g +Rt+ qc r+q OMO70040 409 RSAWTAEEDKNLLLIVQKKGIGNWLDIAVSLGSNRTPFQCLARYQR 454 789*****************************************96 PP
2	Myb_DNA-binding	44	5.1e-14	463	506	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eEd++l av+ +G +W ++a+t+ gRt+ qc +rw k OMO70040 463 RDWTEEEDDQLRIAVEAFGECDWQSVASTLK-GRTGTQCSNRWKK 506 57**************************9.*********98 PP
3	Myb_DNA-binding	48.5	2e-15	516	559	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grW +Ed++l av ++G+++Wk+I++ ++ gRt qc++rw + OMO70040 516 GRWNRDEDKRLTVAVMLFGPKNWKKISEVVP-GRTQVQCRERWVN 559 89***************************.*********87 PP
4	Myb_DNA-binding	42.7	1.3e-13	568	604	2	40
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 g+WT+eEd +l+ a+k++G W++Ia+ m+ Rt++qc OMO70040 568 GSWTKEEDSRLKIAIKKHGYC-WSKIAASMP-SRTDNQC 604 78***************99.*****.***** PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MSLHKQNGAG KVEEQEHEQE GGEEAGEDEF SDSEDYGLTE KEMETIKQAC LRTATDLKDF 60 QIIPAASNAA ADENRPSTSA ATAASGSDSE DDIELCRSIR SRFALDDVCE EPLNMKPLCT 120 LAPSDDDSED DFETLRLIKR RFSDYSTNDT WRKSEEDKIQ IVEPVYKSNM PLEDATCNDV 180 CEDFQNNKTA GKIFHLSSQK AEMQSIDLVH LEQLDANELS TLDGNSSRFP KSAQLLIDAI 240 KRNRSYQTFL GSRELSLKKD PRIQLISARK SRTSEDPEDN DKKFPADCGP PENSSVTNYR 300 MALTKFPLTL QRKKWSKEER ENLEKGIRHQ FQERALQVSL SSSDVSYEDG RYLDNIIATV 360 KDLEITPQRM REFLPKVNWD QLASLYVKGR SGAECETRWL NHEDPLINRS AWTAEEDKNL 420 LLIVQKKGIG NWLDIAVSLG SNRTPFQCLA RYQRSLNACI LKRDWTEEED DQLRIAVEAF 480 GECDWQSVAS TLKGRTGTQC SNRWKKSLHP TRQSVGRWNR DEDKRLTVAV MLFGPKNWKK 540 ISEVVPGRTQ VQCRERWVNS LDPSLNFGSW TKEEDSRLKI AIKKHGYCWS KIAASMPSRT 600 DNQCWRYGKS ILA

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MSLHKQNGAG KVEEQEHEQE GGEEAGEDEF SDSEDYGLTE KEMETIKQAC LRTATDLKDF  60
QIIPAASNAA ADENRPSTSA ATAASGSDSE DDIELCRSIR SRFALDDVCE EPLNMKPLCT  120
LAPSDDDSED DFETLRLIKR RFSDYSTNDT WRKSEEDKIQ IVEPVYKSNM PLEDATCNDV  180
CEDFQNNKTA GKIFHLSSQK AEMQSIDLVH LEQLDANELS TLDGNSSRFP KSAQLLIDAI  240
KRNRSYQTFL GSRELSLKKD PRIQLISARK SRTSEDPEDN DKKFPADCGP PENSSVTNYR  300
MALTKFPLTL QRKKWSKEER ENLEKGIRHQ FQERALQVSL SSSDVSYEDG RYLDNIIATV  360
KDLEITPQRM REFLPKVNWD QLASLYVKGR SGAECETRWL NHEDPLINRS AWTAEEDKNL  420
LLIVQKKGIG NWLDIAVSLG SNRTPFQCLA RYQRSLNACI LKRDWTEEED DQLRIAVEAF  480
GECDWQSVAS TLKGRTGTQC SNRWKKSLHP TRQSVGRWNR DEDKRLTVAV MLFGPKNWKK  540
ISEVVPGRTQ VQCRERWVNS LDPSLNFGSW TKEEDSRLKI AIKKHGYCWS KIAASMPSRT  600
DNQCWRYGKS ILA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	141	RLIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	1e-160	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO70040