PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO69784
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 363aa    MW: 40565 Da    PI: 7.8867
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO69784genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.9e-09930426
              ---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
               +C ++++ G+C+yG+rC++ H+
  OMO69784  9 TICTYYQK-GICSYGSRCRYEHV 30
              58******.***********997 PP
2zf-CCCH185.2e-06112133426
               ---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
               ++C+ fa+ G C++G++C+ +Hg
  OMO69784 112 SICS-FAAAGNCPRGEKCPHIHG 133
               5788.**************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MEHVSRGSTI CTYYQKGICS YGSRCRYEHV KASQLDSSAS SSSMAPHQSL TSDSVPLDHT  60
STNKFVSAEC PGSSRTFYPP IKQAWNLESR HHELLDNGDF VGSRSVNPAE HSICSFAAAG  120
NCPRGEKCPH IHGDLCPTCG KHCLHPFRPQ ERDEHIKMCE KKQKHLEALK HSQEIECSVC  180
LDRVLSKPTA AERKFGLLSE CDHPFCISCI RNWRSSSPSS GMDVNTALRT CPICRKLSYF  240
VIPSVIWYCT PEEKQEIVDS YKAKLRSIDC KHFNFGNGNC PFGTSCFYKH AYRDGRLEEV  300
VLRHIGAEDG ETVIAKNIRL SDFLGDLRIR IGDRGRNHML GDRGSASCIL SSNKLIGEMV  360
IDG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.11e-142C3H family protein