PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO69575
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 288aa    MW: 31404.7 Da    PI: 4.4392
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO69575genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-1888137255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  OMO69575  88 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 137
               69****998.**********843...6***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MERDINIEND AHYSSSSSAV STTVTSSSTS TSSSTSSSST ASFSHIQNKK SSSKGSKKGS  60
GDLENDDSES KKRQRTCDND GDDGKHPTYR GVRMRSWGKW VSEIREPRKK SRIWLGTYPT  120
AEMAARAHDV AALAIKGRSA YLNFPELANE LPRPATTSAK DIQLAASQAA ASTFPSTRRR  180
CNIVEESEAE AEAETEAEAE AEAEAEVPVT QLSSHNSDNG QESSSSPSNS NISIDDDDDN  240
LFDLPDLMID STDRSDGLFS SSYSSSWQIC AIDSGFRIIE DPFSWEYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.18e-51ERF family protein