PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO69561
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HD-ZIP
Protein Properties Length: 295aa    MW: 32542.4 Da    PI: 7.9907
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO69561genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-18130184256
               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               rk+ +++keq  +Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  OMO69561 130 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 184
               788899***********************************************98 PP

2HD-ZIP_I/II1261.7e-40130219191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
     OMO69561 130 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-AL 219
                  69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MGEKDDGLGL SLSLGCSQNQ PSLKLNLMSL ASPPMQSLQQ KNAWNELFHS SDRQLDTRSF  60
LRGIDVNRAP TVADCGEEEG GVSSPNSTIS SLSGKRNERD AVGDETEAER ESCSRGSDDE  120
DGGAGGDASR KKLRLSKEQS LVLEETFKEH STLNPKQKLA LAKQLNLRPR QVEVWFQNRR  180
ARTKLKQTEV DCEYLKRCCE NLTEENRRLQ KEVQELRALK LSPQLYMHMN PPTTLTMCPS  240
CERVAVSSSS SSAAATSSTP TSAAAPNWQR PVPVNPWAAM PISTHRPFNA PASRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135SRKKLRL
2179187RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.15e-90HD-ZIP family protein