PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO69537

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SBP

Protein Properties

Length: 429aa MW: 46966.1 Da PI: 7.5866

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO69537	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.3	1.4e-40	179	256	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ OMO69537 179 RCQVEGCQVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH 256 6**************************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MENGGNIFMG NRGQSGNNNT TINLAWDLRE FNPTRIDWGG NHVNNANNGF NFYAAATRAE 60 TTSTSSSSSA LPEANTIHAL MFLPHHGNPT LAHHHSLYTG DGSHMHPDPH LVCLKLGKRH 120 YFEDSTGFAE RNLAGGFANI GKKGKPYYNH ILGAGGDGAG VGPSSSSAAV MGPPATVPRC 180 QVEGCQVALV NAKDYHRRHK VCEMHSKAPK VVVLGLEQRF CQQCSRFHVV SEFDDSKRSC 240 RRRLAGHNER RRKSSHHDSA SRNSAQENKM MMTGTGRIPI PYVSSATGRA LSLLSSNSIR 300 GDNICDSWIS QSDSDLSSRS SAALRELIAE NRAAILARQL ILDRDHLHLH HHHHENAMDD 360 QHLGSTTCID HQPDGGNWDI QTGSQVTLDL MQASSSAFGM LSVRANKTKD EEQQDCSDLW 420 NSLEGTHVV

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MENGGNIFMG NRGQSGNNNT TINLAWDLRE FNPTRIDWGG NHVNNANNGF NFYAAATRAE  60
TTSTSSSSSA LPEANTIHAL MFLPHHGNPT LAHHHSLYTG DGSHMHPDPH LVCLKLGKRH  120
YFEDSTGFAE RNLAGGFANI GKKGKPYYNH ILGAGGDGAG VGPSSSSAAV MGPPATVPRC  180
QVEGCQVALV NAKDYHRRHK VCEMHSKAPK VVVLGLEQRF CQQCSRFHVV SEFDDSKRSC  240
RRRLAGHNER RRKSSHHDSA SRNSAQENKM MMTGTGRIPI PYVSSATGRA LSLLSSNSIR  300
GDNICDSWIS QSDSDLSSRS SAALRELIAE NRAAILARQL ILDRDHLHLH HHHHENAMDD  360
QHLGSTTCID HQPDGGNWDI QTGSQVTLDL MQASSSAFGM LSVRANKTKD EEQQDCSDLW  420
NSLEGTHVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.3	4e-37	SBP family protein

Link Out ? help Back to Top
Ensembl	OMO69537